Herbaspirillum huttiense: E2K99_17900
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Entry
E2K99_17900 CDS
T05937
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hhf
Herbaspirillum huttiense
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhf03019
]
E2K99_17900 (hrpA)
Enzymes [BR:
hhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E2K99_17900 (hrpA)
Messenger RNA biogenesis [BR:
hhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E2K99_17900 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
NACHT
DUF5669
TsaE
AAA_25
ResIII
SLFN-g3_helicase
SRP54
Motif
Other DBs
NCBI-ProteinID:
QBP76760
LinkDB
All DBs
Position
complement(3996570..4000628)
Genome browser
AA seq
1352 aa
AA seq
DB search
MSVTKAPNTPPGGQAQQNPQQDRPRGPREQRGPRRTAAEPAVHAAPPVRNPLPPVTFPEE
LPVSGRRHEIAEALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKGLIGHTQPRRIAAS
STAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTIII
DEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGRELKGELVPAPVIE
VSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVDE
LARIGSGDVLVFLPGEREIRDAAEALRRHHPPHVEILPLFARLSAQEQERVFKTSNARRI
VLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRVA
AGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIAD
GYQLLQELGAVEEQGGVNRLTALGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAVS
VQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEEAIAHKKSNRQLQEHCRENF
LSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLGNVGFKSEDDAQYL
GARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSWG
EPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINPAEAREIFIRDALVGGDFETRAPF
FAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVDFEKWHKEATAADP
KLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALNQ
VSSDRCDWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERKIFGRGNLID
AIIADIREQITILVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQAR
QQFQKLAEQVAIAPREDEDSAAPAPAAAPGKPVPSAAPAAPASVGEYSNLTSWSFGELPE
LLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLRRLFALQMKEQLK
YLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEGKAR
LGLLVNEIARLCGQVLAEYHALPKKLQGIKAHAAAAADMQAQLSQLVGKRFVAETDYGNL
SHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGRVDPKMTEFRWML
EELRVSLYAQELKTPMPVSVKRLQKVWESMQR
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaccaaagcacccaacactcctcccggcggccaggcgcagcagaacccgcaa
caagatcgtccgcgcggcccgcgcgagcagcgaggtccgcgtcgcaccgccgccgagcct
gccgtccatgccgcgccgcccgtgcgcaatccgctgccgccggtcactttccccgaagag
ctgccggtctccggccgccgccacgagatcgccgaggccctgcgggcccatcaggtcatc
atcgtcagcggcgagaccggttccggcaagaccacccagctgcccaagatctgcctggag
ctgggccgtggcgagaagggcctgatcggccacacccagccgcgccgtatcgccgcctcc
tccaccgccaagcgcatcgcccaggaactcaattcgccgccgggcgagctggtcggctac
aaggtccgcttcaacgacacgctgtccaagggcgcgtggatcaagctgatgaccgacggc
atcctgctggccgagacgcagaccgatccgctgctgcgccagtacgacaccatcatcatc
gacgaggcgcatgaacgcagcctcaacatcgatttcctgctgggctacctgaagcagttg
ctgcccaagcgccccgacctgaagatcatcatcacctcggccaccatcgatgccgaccgc
ttcgcccgccatttcggccgcgagctcaagggcgagctcgtgccggccccggtgatcgag
gtctcgggccgcctgtatccggtggagatccgctatcgccccatcgacaatgccgaccgc
agcggcgtatcgaccgaagtggcacaggcccgcgcacgcgccgaaggccgcgccagccag
gcccagaaggaccgcgaacagcgcgacctgatggatgccgtggtcgatgccgtggacgaa
ctggcgcgcatcggttccggtgacgtgctggtgttcctgccgggcgagcgcgagattcgc
gatgctgccgaggcgctgcgcaggcatcatccgccgcatgtggagatcctgccgctgttt
gcgcggctctctgcccaggagcaggagcgcgtcttcaagaccagcaatgcccgccgcatc
gtgctggcgaccaatgtggccgaaacttcactgaccgtgccgggcatccgctatgtggtc
gatgccggtctggcccgtgtgaagcgttacagctaccgcaacaaggtcgagcagttgcag
atcgaaccggtggcgcagtcggccgcgaaccagcgagccggccgttgcggccgggtggcg
gcgggtgtgtgcattcgcctgtatgacgagcaggatttcctgcagcgccccaagttcacc
gatcccgagatcctgcgctcttcgctggcctcggtcatcctgcgcatgaagtcgctgcat
ctgaccgatgtggagagcttccccttcatcgaaccgccgctgggccgcgccattgccgac
ggctaccagctcctgcaggaactgggtgcggtggaagagcagggcggcgtcaatcgcctg
acggcgctgggcaagcagctggcccgcctgccgctggacccgcgcgtgggccgcatgatc
ctggccggccgcgacaatgcctgcctgaccgaattgctcatcatcgccgcagcggtctcg
gtgcaggacccgcgcgaccggcccatggatgcgcagaatgccgccgacaacgcccacaag
aaattcgccgacgagaagtcggaatttgccagctatctcaagatctggaagtggttcgaa
gaggccatcgcgcacaagaaatcgaatcgccagttgcaggaacattgccgcgagaatttc
ctctcgcaattgcgcctgcgtgaatggcgcgatgtccattcgcagctgctgaccatcgtc
aaggaacaaggctggcgcctcaacgaagccccggccacctacgatcaactgcacctggcc
ctgctgaccggcttgctgggcaacgtcggtttcaagagcgaagacgatgcgcaatacctg
ggcgcgcgcggcatcaagttcaacatctggcccggtgcgcacctgaccaagaagcccggc
cgctgggtgatggcggccgagctggtcgataccgcgcgcctgtatgcgcgctgcgtggcc
aacatccagcccgagtggctggaaaaactcggcggccatctgctcaagaaatcctggggc
gagccgcgctgggaaaagcgtgccgcccaggtcaccgcctccgagcgcgccacgctctat
ggcctggtggtgtacagccagcgccgcatcaactacggcaagatcaacccggccgaagcg
cgcgagatcttcatccgcgatgcgctggtcggtggcgacttcgagacgcgcgcgccgttc
tttgcgcacaaccagaagctggtgcgcgagatcgagaacctggaacacaaatcgcgccgc
ctcgatgtgctggtggatgatgaactgatcatcggtttctacgacaagctgatcccgcac
gacatctgcaacggggtcgatttcgagaagtggcacaaggaggcgactgccgccgatccc
aagctgctgtacctgaaccgtgacgacctgatgcgtcatgaagctgcgggcgtgaccacc
gagcttttccccaagaccatgaacgtggccggcatcgccatggccttgagctatcacttc
gagcccggtgcggcgcgcgatggcgtgaccctcaccgtgcctctgtatgcgctcaaccag
gtctcctcggaccgctgtgactggctggtgccgggcatgttgaaggagaaggtgcacctg
ctgctcaaatccctgccgcagaagctgcgccgccattgcgtgccgctgcccgattacgct
gcgcgtttctgcgagcgcatggaagagcgcaagatcttcggccggggcaacctgatcgac
gccatcattgccgacatccgcgagcagatcacgattctggtcaagcccagcgacttcaag
caggagacgctgtcggcgcaccatgcgatgaacttcaagatcgtcgacgagcatggacgc
cagctggagatgggccgcaatctcgctgccctgcaggccgaattcggcgggcaggcgcgc
cagcagttccagaagctggccgagcaggtggccattgccccgcgcgaggatgaggacagt
gccgcacccgcgcccgctgctgcacccggcaagcccgttccgagcgcagccccggcggcc
cccgcctcagtgggcgagtacagcaatctcaccagctggagtttcggtgaattgccggag
ctgctggagatcacgcgtggcagcggcaagcaggcacagacgctgatcgggttccccgcg
ctggtggatcgcaagacgcattgcgatctggaagttttcgatgatccggccgaggcggcg
cgtttccattacgctggcctgcgtcggctgtttgccttgcagatgaaggagcagctgaag
tatctggagaagaacattccgggcctgcagcagatgggcatgcaattcatggcgctgggt
tcgcaggaagagttgcgtgagcagatcctcaatgccggactggaacgggctttcctgcag
gacccgctgccgcgcaacgcggacgaattcaaccgccgccgtgatgaaggcaaggcgcgg
ctgggtttgctggtcaacgagattgcgcgcctgtgcggccaggtgctggcggagtaccac
gcgctgcccaagaagctgcagggtatcaaggcccatgcggctgcggcggctgatatgcag
gcgcagttgtcgcaactggtgggcaagcgtttcgtggcggaaacggactacggaaatctc
agccactatccgcgctacctcaaggccatcaacgtccggctggacaagctgcgcgccgat
ccggcccgcgatacgcggctgctggcagagtggaattcggtggccttgccctaccagcgc
gccctgaaggaccgcgccggccgggtcgatcccaagatgaccgagttccgctggatgctg
gaggaactgcgcgtgtcgctttatgcgcaggaactgaagacgccgatgccggtgtcggtg
aagcggttgcagaaggtgtgggagagcatgcagcggtga
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