Herbaspirillum huttiense: E2K99_20675
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Entry
E2K99_20675 CDS
T05937
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hhf
Herbaspirillum huttiense
Pathway
hhf02020
Two-component system
hhf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
E2K99_20675
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E2K99_20675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhf03021
]
E2K99_20675
Transcription machinery [BR:
hhf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E2K99_20675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
Xre-like-HTH
DUF4363
Motif
Other DBs
NCBI-ProteinID:
QBP77251
LinkDB
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Position
4632510..4634000
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AA seq
496 aa
AA seq
DB search
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERLDDALDNSVRL
LADGAVSSSPSSGVAETSHEGSGEAAPAASDGDSSFDYQDNAPEAGVTGDADWSFDDVAR
SGKSPDDDDARPQLEAHELTLREHLLEQIRVTARTLRDRALLELLTDALDETGYLEEPLE
DIHARLPEELGIDMEELSISLKLLQSLDPAGVGARSAGECLALQIRRLPKIPFVTRKLAL
RIVEDYLPLFAQRDFNKIKKALDCDDEDLREAQAVIRQCRPHPGAEFARDASDYVVPDVI
VKQTKNGWQVMLNHEVMPKLRVNAMYASALKQAKGEGSLSSQLQEAKWLIKNMRQRFDTI
LRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELK
YFFGSHVATETGGEASSTAIRALIKQLIGAENPQTPLSDSKIADMLAEQGMVVARRTVAK
YREVLKIPPVNLRKSL
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagtcgctccagttacgtacctcgcagcacctcgcattgacgccgcaactgcag
cagtcgatcagactgttgcaactgtcgacgctggaactgcaccaggaactggaacagatc
ctctccgacaatcccctgctggaacgcctcgacgacgcgctcgacaattcggtacgtctg
ctggccgatggcgcggtctccagttcgccctccagcggcgttgcggaaaccagtcacgaa
ggcagtggcgaagcggccccggccgccagcgatggcgattccagcttcgactaccaggac
aacgcgccggaagccggtgtcacgggggatgccgactggagcttcgacgacgtcgcgcgc
agtggcaagtcgccagacgatgacgatgcccgtccgcaactcgaagcgcacgaactgacc
ctgcgcgaacacctgctggaacagatccgcgtgaccgcacgcaccctgcgtgatcgtgcg
ctgctggaactgctcaccgatgcgctcgacgagaccggctatctggaagagccgctggaa
gacatccacgcacgcctgcccgaagagctgggcatcgacatggaagagctgtcgatttcg
ctcaagctgctgcagagcctggacccggcgggtgtcggtgcgcgcagtgccggcgaatgc
ctggccctgcagatccgccgcctgcccaagattcccttcgtgacgcgcaagctggcgctg
aggatcgtggaggattacctgccgctgtttgcacaacgcgatttcaacaagatcaagaag
gcactggattgcgatgacgaagacctgcgtgaagcgcaggccgtgatccgccagtgccgt
ccgcatccgggtgcggaattcgcgcgtgatgcctcggactatgtggtgccggacgtgatt
gtcaagcagacaaagaacggctggcaggtcatgctcaaccatgaggtcatgcccaagctg
cgcgtcaatgcgatgtatgccagtgcattgaagcaagccaagggagaaggttcgctgtcg
tcgcagttgcaggaagccaagtggctcatcaagaacatgcggcaacgtttcgatacaatt
ttgcgcgtcgcgcaggctattgtggaacgtcaaagaaacttcttttcacatggggcagtg
gccatgcgcccccttgtgctgcgtgaaattgctgatacactgggtctacacgagagcacc
atctctcgcgtgacgactcagaaatacatgctcactccgcatggaatgtttgagttgaaa
tacttcttcggtagccatgtcgcgactgaaaccggaggtgaagcatcctccaccgcgata
cgggcgctgatcaaacagttgataggagccgagaacccgcagaccccattatccgatagc
aagattgcggatatgctggcagaacaaggcatggtggtcgcgcgacgcacagtcgccaaa
taccgcgaagtgttgaagattccgccggtcaatctccgcaagtccctctga
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