Halomicronema hongdechloris: XM38_029380
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Entry
XM38_029380 CDS
T04928
Symbol
sbcC__1
Name
(GenBank) putative DNA double-strand break repair Rad50 ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
hhg
Halomicronema hongdechloris
Brite
KEGG Orthology (KO) [BR:
hhg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhg03400
]
XM38_029380 (sbcC__1)
DNA repair and recombination proteins [BR:
hhg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XM38_029380 (sbcC__1)
Archaeal homologous recombinant proteins
XM38_029380 (sbcC__1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
Rad50_zn_hook
SbcC_Walker_B
AAA_21
AAA_29
Motif
Other DBs
NCBI-ProteinID:
ASC71984
UniProt:
A0A1Z3HNU7
LinkDB
All DBs
Position
complement(3089557..3092565)
Genome browser
AA seq
1002 aa
AA seq
DB search
MIPKQLTLTNFLSYRQASLNFQGLHVACIAGANGAGKSSLLEAISWALWGQSRGSCDDDV
IHGGEMEAQVDFVFEHHHQTYRILRSRRRRQNSSLEFQVETESGFLSLTRRGVRATQQLI
CQQLRLDYDTFVNSAYLRQGRADEFMLKRPSERKQILADLLKLDQYDQLADKAKERVRQA
KAEAKVLEQTLVDLQAQLSQQQLVAQQQQELTTRLATLDQQQQADQTTLAGLQEQRQRRQ
RWQQQRTLLLQQVDHGQQVRSRLRQELQELQQRQQAVSRLLAQAEAISQGYGQWSQLQAE
EARLSQVWEAYQRLHAQREQLQQQVTQPRDQLLRRQQQAQQQLQGLEQEGVELAAILQRQ
DQVMTAMAQLRQAQERLHQLDQRQLQVLPLLQQCQALQRDLQQAALRLAARLEELSHSEQ
TLKQHQAQQPQLQQAVLEVTHTLEQLQRRRAYQERVREKGLERRRFMEQLQDRQRACETQ
LAQLEQKMELLAQPDAPCPVCDRTLGVDHRQGILARHRQEQQDLQREIWVIREQLAVSEK
ELQVLRQEYRDLDAELANYDPTLEQRGQLQAQLDSSAGMQQRLQQILQEQTQLRQALEHQ
NYAADVQTALQAVEQQLAELPYDERDHALARGQVDRLRWAEIKQAEIKQAQQKHRHLQGR
RQALEATLAEVEAQLAALAASPQQQHLSQVEQQLAHLDYSPDYHHQLRQQLRAAQDWRLR
YQALEQARQQQPQVQQQVDEIERQVQMRSQELSRLQTELTELDQRLQTTPDPQAEVVHLE
QQLQGRQQAREQHLAQLGALRQQYQYLQQQQAHLDSQQQALTAARHQQRVHQAVAHAFGR
NGIQALIIETLLPQLEAETNQILSRLSANQLHVQFVTQRVGRSRQSKLIDTLDILIADTQ
GTRPYETYSGGEGFRVNFAIRLALARLLAQRSGVPLQMLIIDEGFGTQDQQGCERLIAAI
NAIATDFACILVVTHIPHFREAFQTRIDVVKTEAGSRLDLSM
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgattcccaagcaattgaccctgacaaatttcctcagttatcggcaggccagtctcaat
ttccagggcctgcatgtggcctgtattgccggagccaatggagccggtaagtcatcatta
ctggaggccattagctgggcactttggggccagagtcgcggcagttgcgatgacgatgtc
atccatgggggcgagatggaagctcaggtggattttgtctttgagcaccatcatcagacc
tatcgcattctccgcagccgccggcgtcggcagaatagctctttagaatttcaagtcgaa
actgagtcaggctttctcagcttgactcggcgaggggtgcgggcaacgcagcagctgatc
tgccagcagctgcgactggactatgacacctttgtcaactcggcctatttacgtcaggga
cgcgccgatgagttcatgctgaagcgccccagtgagcgcaagcagattctggccgattta
ctcaagttggatcaatacgatcagctggcggataaggctaaggagcgggttcgccaggcc
aaggccgaagctaaggttttggagcaaaccctggtggatcttcaggcccaattgagtcag
cagcagttggtggcacaacagcagcaggaattgaccactcgcttggccacactcgatcag
caacaacaagccgaccaaactactctggccgggttgcaggagcaacggcagcggcgacaa
cggtggcaacaacagcggacactgctactgcagcaagttgatcacggtcaacaagtacga
agccgattacggcaagaattgcaagagctgcagcaacggcagcaggcggtgagtcggttg
ttggctcaggcagaggcaattagccaaggctatgggcagtggtcacagctacaggcggag
gaggcgcgtctctcccaggtttgggaagcttaccaacggttacacgcccagcgagagcag
ctgcagcaacaggtcacccagcctcgagatcagttgctgagacgacagcagcaagctcag
cagcagttgcaagggctggagcaggagggggtggagctggcggccattttgcagaggcag
gatcaggtgatgacggcgatggcccagctgcgccaggcccaggagcgcttgcatcagctc
gatcaacggcagctacaggtgttgccgctactgcagcagtgccaggcgctacagcgcgac
ttacaacaggcagcactgcggctggcggctcgcttggaggaactgagccacagtgagcaa
actttgaagcagcaccaggctcagcagcctcagttgcagcaggcagtgctggaggtgacc
cataccctagaacagttgcaacggcggcgtgcctatcaggagcgagtgcgggaaaagggg
ttggaacgccgtcgcttcatggagcagctgcaggacagacagcgggcctgtgaaacccaa
ctggcccagctggagcagaaaatggagttgttggcgcagcccgatgccccatgcccggtg
tgcgatcgcaccttgggagtggaccaccggcaaggcatcttagcgcgccatcgccaggag
cagcaggacctacagcgagagatctgggtgattcgggagcaactagcggtgtcggagaag
gagctgcaggtgctacggcaggaatatcgcgatctagacgctgaattggccaactacgac
cccaccctggaacagcggggacagctgcaggcccaactggatagcagtgccggcatgcaa
cagcggttgcagcagattttgcaggagcagacccagttgcgccaggccctagagcaccag
aactatgccgccgatgtgcagacggccctgcaggcagtggagcaacaactggccgagtta
ccctacgacgagcgcgatcatgccctggcccggggacaggtggatcggctgcgttgggcc
gagatcaagcaggccgagattaaacaggcccagcagaagcaccgccacttgcaaggacgc
cgtcaggccctggaggcaaccctggcagaggtggaagcccagctagcagccttggcagca
tcgcctcagcagcaacacctgagccaggtggagcagcagttagcccatctcgactatagc
ccggactatcatcatcagctgcgccagcagctgcgggcggcccaagattggcggctgcgg
taccaggcgctggagcaggcccggcagcagcagccccaagtgcagcagcaggtggatgag
atcgagcggcaggtgcagatgcgatcgcaggaactcagccgcctacagacggagctcacc
gaactagaccaacggctgcagaccactcccgatccccaggccgaagtggtccacctagag
cagcaactgcaagggcgtcaacaggctcgggagcagcatctggcccagttgggagccctg
cgtcagcaataccagtatctgcagcagcaacaggcccatctcgacagccaacagcaagcc
ctgaccgcggcccgccatcaacagcgggtacatcaggcggtggcccatgccttcggtcgc
aatggcattcaggccctgatcatcgagaccctactgccacaactggaagccgaaaccaac
cagatcctcagccgcctcagcgccaaccagctccatgtgcagtttgttacccagcgggtc
gggcgcagtcgccagagcaaactgatcgacaccctcgacatcttgatcgccgatacccaa
ggcacccgcccctacgagacctactccggtggtgaaggctttcgggtcaactttgccatt
cgcttggccctggcccggttactagctcagcgctccggcgtgcccctgcagatgttgatc
atcgatgagggcttcggcacccaagatcagcagggctgtgaacggttgatcgccgccatc
aatgcgatcgcaaccgactttgcctgcattttagtggtcacccacatccctcactttcgc
gaggccttccaaactcgcattgacgtggttaaaaccgaggctggttcccgcttagaccta
tcaatgtaa
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