Halomicronema hongdechloris: XM38_037200
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Entry
XM38_037200 CDS
T04928
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hhg
Halomicronema hongdechloris
Pathway
hhg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XM38_037200 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhg03021
]
XM38_037200 (rpoC1)
03400 DNA repair and recombination proteins [BR:
hhg03400
]
XM38_037200 (rpoC1)
Enzymes [BR:
hhg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XM38_037200 (rpoC1)
Transcription machinery [BR:
hhg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XM38_037200 (rpoC1)
DNA repair and recombination proteins [BR:
hhg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XM38_037200 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
ANM3_zf-C2H2
Motif
Other DBs
NCBI-ProteinID:
ASC72761
UniProt:
A0A1Z3HR22
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All DBs
Position
3922227..3924143
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AA seq
638 aa
AA seq
DB search
MPKLEQRFDYVKIGLASPERIRQWGERTLPNGMVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGI
PSYIAILLDMPLRDVEQIVYFNAYVVLDAGNAENLTYKQLLTEDQWIEIEDQLYDEESQL
IGVEVGIGAEALQQLLQDLDLEADAENLREEIANSKGQKRAKLIKRLRVIDNFIATGAKP
ECMVLDIIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRN
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKIHQCGLPREMAIELFQPFVIHRLIRQGLVNNIKAAKKLIQRNDPSVWDVLEE
VIESHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL
EAQSEARLLMLASNNVLSPATGTPIITPSQDMVLGCYYLTANTPYDQKGDERYFASMEDA
ILAFEHGLVDLHAKVWLRYDGPVESDNSNDKVLEEIKADDGTITKIYKLRRIREDAEGSV
ISQYIKTTPGRHHLQQNRSRCLSELGKYGKAVMPAITG
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagctcgaacagcggtttgattacgtcaaaattggccttgcttctcccgaacga
attcgccaatggggcgagcgcactcttcccaatggcatggtagtgggagaggtgaccaag
ccggaaaccattaattaccgaactctcaagcctgagatggatggcttgttctgtgaacgg
atcttcgggccagcaaaagactgggagtgccactgtggcaaatacaagcgggttcgacac
cgaggcatcgtgtgtgagcgatgtggtgtagaagttactgaatctcgggtacgccgtcat
cgcatgggctacatcaaattagctgctcccgtagctcacgtttggtatttgaaagggatt
cctagctacattgccatcttgctggatatgcccttgcgagacgttgagcagatcgtctac
ttcaacgcctatgtcgtcctagatgctggtaatgctgaaaatctgacctacaagcaactg
ctgaccgaagatcagtggattgagattgaagatcagctctacgatgaagagtcccaactg
atcggcgtcgaagttggcattggagcagaagccctgcaacagctcctacaggatcttgac
ttagaagcagatgcagagaacctacgagaggaaattgctaactccaaagggcaaaagcgg
gccaaattaattaagcgactgcgggtcatcgataacttcatcgctactggggcaaaaccc
gaatgtatggtgctagatatcatcccagtgattccgcctgatttgcgaccgatggtgcag
ttggatggaggtcggtttgcaacttctgacctgaatgatctctatcgtcgggtgattaat
cgcaataaccgtctggccaggttacaagagattttggcccctgagattattgtccgcaat
gagaagcgtatgcttcaggaagctgttgatgccctcatcgacaatggtcgccgtggccgt
actgtagtcggagctaacaaccgaccattaaaatccttgtcagacatcattgaaggtaag
caaggacgatttcggcagaatttgctaggtaaacgagtggactattctgggcgctcggtg
attgtggtaggtcccaagctgaaaattcatcagtgtggtctgccccgggagatggccatt
gaattatttcaaccattcgtgattcaccgcctgattcggcagggcctagtcaataatatc
aaggcagctaagaagctaattcagcgcaatgatcctagtgtctgggatgtgctggaagaa
gtgattgaaagtcatccggtacttctaaaccgcgctcctaccctacaccgcctaggtatt
caagcctttgagcccatcttagttgaaggtcgagccattcaactccatcctctagtctgt
cctgcctttaacgcagactttgatggtgaccagatggcagtgcatgtgccactatccctg
gaagctcagtcagaggcgcgactgcttatgctggcatctaacaatgtgctgtctccagca
acgggaacacctattattacccctagccaagatatggtcctgggatgttactacctgaca
gcaaatactccctatgaccaaaaaggtgatgagcgttactttgccagtatggaagacgcc
attttggccttcgaacatgggctcgtcgatctacacgccaaagtttggttgcggtacgac
ggtcctgtggagtcagataattcgaatgacaaggtcctcgaagaaatcaaagccgacgac
ggtaccatcactaagatctataagctgcgccggatacgagaagacgccgaagggagcgtg
atatcgcagtacatcaaaaccacgccgggacggcatcatctacaacaaaaccgttcaaga
tgccttagtgagctaggcaaatatggcaaggcggtcatgccagcaatcacaggctga
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