Halomicronema hongdechloris: XM38_038780
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Entry
XM38_038780 CDS
T04928
Symbol
crhR_3
Name
(GenBank) RNA helicase CrhR
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hhg
Halomicronema hongdechloris
Pathway
hhg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XM38_038780 (crhR_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhg03019
]
XM38_038780 (crhR_3)
03400 DNA repair and recombination proteins [BR:
hhg03400
]
XM38_038780 (crhR_3)
Enzymes [BR:
hhg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XM38_038780 (crhR_3)
Messenger RNA biogenesis [BR:
hhg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XM38_038780 (crhR_3)
DNA repair and recombination proteins [BR:
hhg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XM38_038780 (crhR_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASC72918
UniProt:
A0A1Z3HRL0
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All DBs
Position
4088215..4089660
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AA seq
481 aa
AA seq
DB search
MVASTIPWETVQQTFRRIWGYDDFRPPQAEIIRGLLDQRDTLVILPTGGGKSLCFQLPAL
LQSGVTLVLSPLVALMENQVQELREHQLPAATLHSELSPHQRRQVLRALEANRLRLLYLS
PETLLSPPVWQRLRQPSVIINGLILDEAHCLVQWGDSFRPVYRRLGAVRPALLAQRPPGT
RLPIAAFTATADPTVQRTLIEVLRLQQPHQVRLNPYRSNLHLATRIVWSPRQRRQTMQRF
IQQRSGQAGLVYVRSRQDSEDLAAWLMIQGQTAAAYHAGLSSGDRRRIEMAWSQNQVQTV
VCTSAFGMGVNKPDTRWVLHYQAPSSLTEYVQEVGRAGRDGRPAEALTLMSEPTGWLDPM
DQQRWRFFTTQTQALRREAQHIARQIPAVGSVAQVQQQFKQGAIALAWLHGQGRLTWSDP
FHYRLLPGSNSTATLGSVVSAMQDYLSSRRCRWQHLLEQFGFGHEARQLGTCGHCDRCQR
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggtggcatcaaccattccctgggaaactgtccagcagacctttcgtcgcatctggggg
tatgacgactttcgtcccccccaagccgagatcattcggggactactggaccaacgagat
acgttagtgattttgcccaccggaggcggcaaatccctctgttttcagttgccagccctg
ttgcaatctggggtaaccctggtgttgtcgcccttagtagcattgatggaaaaccaagtg
caggagctgcgggaacaccaattgccagccgccaccctgcacagtgaactctctcctcac
cagcggcgtcaggtgctgcgggccttagaagccaatcgcctacgactcctttacctgtct
cctgaaactctgctcagcccgccagtttggcagcgattgagacagccctcagtcataatc
aatggcctgatcctggacgaagcccactgcttggtgcagtggggagatagctttcgtccc
gtctatcgacggctgggagcagtgcggccagccctattggcccagcgccctccgggaact
cgcctgcccattgcggcctttaccgccaccgccgatccgacggtgcagcggactttgatc
gaggtactcagactgcagcaaccccatcaggtgcggttgaacccctatcggtctaatctg
cacttagctactcgcatcgtctggagtcctcggcaacgacggcaaacgatgcagcgattt
attcaacagcgatccggccaagccgggttggtctatgtgcgcagccgccaagatagcgaa
gacctggcggcttggttgatgatccaggggcagactgcggcagcctaccatgccggcttg
agttctggcgatcggcgccgcatcgaaatggcctggagccaaaaccaggtgcaaaccgtt
gtctgtacctcggcctttggcatgggcgtcaacaagcctgacacccgctgggtattgcac
taccaagctcccagttccctaacagaatatgttcaagaagtgggtcgggccgggcgcgat
ggccgaccggcagaggccctgaccctgatgagtgaaccgaccggttggctggacccgatg
gatcagcagcggtggcgattcttcacgactcagacccaggccctgcgacgagaggcccag
catattgcccgccaaattccagcggtggggtctgtagctcaggtgcagcaacagtttaag
cagggagccatagccctggcctggttacacggccaggggcgattgacctggtcagatccg
ttccactatcgcctactaccggggagtaactcgaccgctaccctggggtcagtagtctca
gccatgcaggattatctgagcagccgtcgctgtcgttggcaacacttactagagcagttt
ggctttggtcatgaggctcggcaactgggaacttgcggccattgcgatcgctgccagaga
tcttga
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