Halomonas hydrothermalis: CLM76_00430
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Entry
CLM76_00430 CDS
T05117
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hhh
Halomonas hydrothermalis
Pathway
hhh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CLM76_00430 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhh03400
]
CLM76_00430 (recB)
Enzymes [BR:
hhh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CLM76_00430 (recB)
DNA repair and recombination proteins [BR:
hhh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CLM76_00430 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATH76165
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All DBs
Position
85918..89616
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AA seq
1232 aa
AA seq
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MSQPAPLNPLTLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGQHGEDDTAFVRPLTPPE
ILVVTFTNAATQELRERIRHRLVEAAAVFRDQGEDSLLLALRSQYPEATWPACARRLELA
AEWMDEAAVSTIHSWCYRMLREHAFDSGSLFSLNLENDQHELEQEVVRDYWRTFYYPLDA
EALGSITGYWKSPDHLHQDVRKLLHESDALGALRPEPTHTLSTAAAERSALLSTLKAPWP
EWLDDLVPALEDAATRKAFKGQSFNAKSRTNWLGALREWCDSDLERPALTPAAWKRLTPD
GMSEIWKEGAPPCPKAWQALAELPAALNTLPEPRNDLLIHAVQWCKVRLEREQERRAEMG
PNDLLTHLDRALQGPNKEALAAQILRQFPVALIDEFQDTDPIQYRIFNAVYEVAKPRRDA
AMLLIGDPKQAIYAFRGADIFTYLKAREDTAGRHVTLGTNFRSSRAMVAAVNHCFRYADE
HPAGAFLFREEGGDNPLPFLPVDAKGRSEQIVHFGQPLPAMTLWPLAADEPLSKTAYQTE
MAERCASYMAELLNAGQHGKSGFQTHDALTPLKPSDMAVLVNGLQEARAIRQALASRGVK
SVYLSDHDKVFSSPMAAQVERWLRTCAEPLASSRQAEAHLRAALATPVLGLSLAELDHLQ
QNELAWEARVEQFSYYHRLWQRQGVLPLVRRIMVDFEIPARLLAEFEEGERLLTDLLHLG
ELLQQASAELDGEHALIRFLFDAIADPESHGDSHKLRLESDADLVKVVTIHKSKGLEYPL
VFLPFIVNHRPVKAEDVPLRWHDSEGNLQLSLDADDTILATADRERLGEDLRKLYVALTR
ARHATWLGLAPLKGLENSALGYLLTGGSTLSPDALPKALDALVEGSDIHLGTPPEPTADR
VTPVAESGALGHARTPTRPAKEHWWIASYSALRLSGTLTAPVLPPLEPTTAQEATAFEVL
DEPQELSQELSQERSQPEAYHLHKFPRGPGPGTFLHGLLEWAGKQGFDTAANDRDALNDM
LWRRVQLRGWQAWQEPLAGWLSALLTTPLPLAAPTPQSVALNELESYQVELEFWFAAKRV
NTQAIDALVSKHLLPGIERPALDADTLNGMLKGFIDLAFEHQGRFYVLDWKSNYLGPNDS
AYEPEALRHALLAKRYDLQAALYLLAMHRLLKARLPDYDPHQHLGGSMTVFLRGSRSPGR
GVVGEPAPVELIEALDSLFAGEPHATQQEATA
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcccgccccgctgaacccgctgacgctgccgcttcacggcagccgtttgatc
gaagccagcgcgggcacggggaaaaccttcaccatcgcgctgctttacgtgcgcctggtg
ctgggcgggcagcacggcgaggacgacaccgccttcgtgcgcccgctcaccccgccggaa
attctggtggtcacgttcaccaacgccgccacccaggagctgcgcgaacgcattcgccat
cggctggtggaggcggctgccgtatttcgtgatcagggtgaagactctcttcttctggcg
ctgcgcagccagtaccccgaggccacctggcccgcctgtgctcgccgcctggagctggcc
gccgagtggatggacgaagccgccgtttccaccatccacagctggtgctaccgcatgctg
cgggaacacgccttcgatagcggcagcctgttctcgctcaacctggaaaacgaccagcac
gaactggagcaagaagtggtgcgcgattactggcgcaccttctactacccgctggacgcc
gaggcgctgggcagcatcaccggctactggaaatcccccgaccacctgcatcaggacgta
cgcaagctgctgcacgaaagcgacgcactgggcgcgctacgccccgagccaacccacacg
ctgagcaccgccgccgccgagcgcagcgccctgctcagcacgctaaaagccccctggccc
gaatggctggacgacctggtgcccgcactggaagacgccgctacgcgcaaagccttcaag
ggccaaagcttcaacgccaaaagccgcaccaactggctaggcgcattgcgggagtggtgc
gacagcgacctagagcgccctgcgctcactcccgccgcctggaaacgcctgaccccggac
ggcatgtcggaaatatggaaagagggcgcgccaccctgcccgaaggcctggcaggcgctg
gccgagctgcccgccgcgctcaacacgctgcccgagccacgcaacgacctgctgattcat
gccgtgcagtggtgcaaggtgcgcctggagcgggagcaagagcgccgcgccgaaatgggc
cccaacgacctgctcacccacctggaccgcgccctgcaaggccccaacaaagaggccctg
gccgcacagatactgcgccagttccccgtggcgctgatcgacgaattccaggataccgac
cccatccagtaccgcatcttcaacgcggtgtatgaggtcgccaaaccccgccgcgacgcc
gccatgctgctgatcggcgaccccaagcaggccatctacgcctttcgcggcgcggatatc
ttcacctacctgaaagcccgcgaagacaccgctggccgccacgtgacgctgggcaccaac
ttccgctccagccgcgccatggtagcggcggtgaaccactgcttccgctacgccgatgag
cacccagccggggcgtttctattccgcgaagaaggcggcgacaacccgctgccctttctg
ccggtagacgccaaaggccgaagtgaacagattgttcacttcggccaaccgctgcccgcc
atgacgctctggccgctcgccgccgacgagccgctctccaaaaccgcctaccagaccgaa
atggccgaacgctgcgcctcgtacatggcggaactgctcaacgcaggccaacacggcaag
agcggctttcaaacccacgacgcgctcaccccgctcaagccttccgatatggcagtgctg
gtgaacggcctgcaggaagcccgcgccattcgtcaggcgctggccagccgaggggtgaag
agcgtgtacctgtcggaccacgacaaggtgttcagctcgcccatggccgcccaggtagag
cgctggctgcgcacctgcgccgagccgctggccagctcccgccaggccgaagcacacctg
cgcgccgcgctggccaccccagtgctggggctcagccttgccgagctggaccacctgcag
cagaacgagctggcctgggaagcgcgggtcgagcagttcagctactaccaccgcctgtgg
cagcgccagggcgtgctgccgctggtgcgccgcatcatggtggatttcgagattcccgcc
cggctgctggcagagtttgaggaaggtgagcgcttgctcaccgacctgctgcacctgggc
gaactgctgcaacaggccagcgccgagctggacggcgaacacgcgctgattcgctttctg
tttgatgccattgccgacccggaaagccacggcgacagccacaagctgcgcctggagagc
gacgcggatctggtcaaggtggtcaccatccacaaatccaaagggttggagtacccgctg
gtgttcctgcccttcatcgtcaaccaccggccggtgaaagccgaagacgtaccgctgcgc
tggcacgacagcgagggcaacctgcagctcagcctggacgccgatgacacgatactcgcc
accgccgaccgcgaacggctgggggaagacctgcgcaaactctacgtcgcgctcacccgc
gcccgccacgccacctggctggggctggccccgctaaaaggcttggaaaacagcgcgctg
ggctatctgttgaccggtggcagcaccctttcccccgatgcgctccccaaggcgctcgat
gccctggtggaaggcagcgacatccacctcggcacgccgcccgagcccaccgctgatcgc
gtgacgcccgtggcggaaagcggcgccctgggccacgcccgcacgcccacgcgcccggcc
aaggagcactggtggattgccagctactccgcgctgcggctttccggcacgcttaccgcc
ccggtgctgccaccgctggagcccaccaccgcccaggaagccaccgccttcgaagtactg
gatgaacctcaagaactatctcaagaactatctcaagaacgatcccaaccggaagcgtat
cacctgcacaaattcccccgtggccccggccccggcacctttctacacgggctgctggag
tgggcaggcaagcaaggtttcgataccgccgcaaatgatagagacgcgctcaacgacatg
ctttggcggcgggtacagttacgcggctggcaggcatggcaagaaccgctggcgggctgg
ctaagcgccctgctcaccacgccgctaccgctggccgcgcccaccccgcaaagcgtggcg
ctgaatgagctggaaagctaccaggtagagctggagttctggtttgccgccaagcgggtg
aacacccaggccatcgacgcgctggtgagcaagcacttactgccaggcatcgagcgcccc
gcgctggatgccgacaccctcaacggcatgctgaaaggcttcatcgacctggccttcgag
catcaagggcgcttctacgtgctggactggaaatcgaactacctgggccccaacgacagc
gcttacgagccagaagccctgcgccacgcgctgctcgccaaacgctacgacctacaggcg
gcgctctacctgctcgccatgcaccggctgttaaaagcgcgcctgccggattacgacccg
caccagcacttgggcggttcgatgacggtattcctgcgcggcagccgcagccctgggcgt
ggcgtggtgggcgaacccgccccggttgaactcatcgaagccctggacagcctgtttgca
ggcgagccccacgccacccagcaggaggccacggcatga
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