Halomonas hydrothermalis: CLM76_04470
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Entry
CLM76_04470 CDS
T05117
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hhh
Halomonas hydrothermalis
Pathway
hhh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLM76_04470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhh03021
]
CLM76_04470 (rpoC)
03400 DNA repair and recombination proteins [BR:
hhh03400
]
CLM76_04470 (rpoC)
Enzymes [BR:
hhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLM76_04470 (rpoC)
Transcription machinery [BR:
hhh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLM76_04470 (rpoC)
DNA repair and recombination proteins [BR:
hhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLM76_04470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ATH76895
LinkDB
All DBs
Position
complement(952862..957076)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINTLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGHASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEVDVEEETGERSEHRRLYDTTVGRALLFRILPEGVPFALIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVVDREGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAQDVIDPSTEEVLIPRNTLLDEKWCASLDTMGVDEIIVRSTITCDTAHGVCSSCY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDAGTVVAK
WDPHTHPIIAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LQDAAGEYVSVSGSNTPVQYLLPGNSIISVDDGSTIGVGEVVARIPVEASGNKDITGGLP
RVADLFEARKPKESAILAEISGVVSFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GEAVEKGEVISDGPSNPHDILRLLGVAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDSGDSDFITGDQAELVRVLEQNERLEKEGKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVERLF
NPSATEVEQELGAQLTALDSDDDL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcagtctcagtccgaagagttcgacgcgatc
aagattaccctcgcgtcgccggacatgattcgctcctggtcgtttggcgaggtgaagaag
cccgagaccatcaactaccgtaccttcaagccggagcgggatggtctgttctgcgccaag
atctttggcccggtcaaggactacgagtgtctgtgcggcaagtacaagcgcatgaagcac
cgtggcatcatttgtgagaagtgtggcgtcgaagtcaccaaggctgccgtgcgccgtgag
cgcatgggccacatcgagctggcctcgccggtcgctcacatctggtttttgaagtcactg
ccgtcgcgtatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctgtac
ttcgaaagcttcgtggtcatcgacccgggcatgaccacgctggagcgtggtcagctgctc
aacgacgagcagtacttcgaagccctggaagagttcggcgatgacttcgacgcccgcatg
ggtgccgaagccgttcaggaactgctcaaggacatcgatctggaagaagagatcaacacg
ctgcgcgaagagattccgcagaccaactctgaaaccaagatcaagaagctctccaagcgc
ctgaagctgctcgaagcgttctaccactccggcaatgcgccggcgtggatggtcatggaa
gtgctacccgtgctgccgccggacctgcgtccgctggtaccgctggacggtggccgcttc
gcgacctccgatctcaacgacctctaccgtcgtgtgatcaaccgtaacaaccgcctgaag
cgtctgctggacctcaatgcgccggacatcatcgtgcgcaacgagaagcgtatgctgcag
gaagcggtggatgcgctgctggacaacggccgtcgcggccgtgccatcactggctccaac
aagcgtccgctgaaatcccttgccgacatgatcaagggtaagcagggccgtttccgtcag
aacctgctgggtaagcgtgtcgactactccggccgttcggtcatcaccgtgggcccgacc
ctgcgtctgcaccagtgtggtctgccgaagaagatggccctcgagctgttcaagccgttc
atctactccaagctgcagtcgctgggccatgcgtccacgatcaaagccgcgaagaagatg
gtcgagcgcgaactgccggaagtgtgggatattctggccgacgtcatccgcgaacacccg
gtactgctcaaccgtgcaccgaccctgcaccgtctgggtatccaggcgttcgaaccgctg
ctgatcgaaggcaaggcgatccagctgcacccgctggtgtgtgcggcttacaacgccgac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctcgaagcg
cgtgcgctgatgatggccaccaacaacgtgctgtcgccagccaacggcgagccgatcatc
gtgccgtcgcaggacgttgttctgggtctgtactacatgacccgcgaaaagatcaacgcc
aagggcgaaggcatggtgttctctgacctcaacgaggtagagcgtgccttcggtactcag
tccgtctcgctgcatgctcgcgtcaaagtgcgcctggatgaagtggatgtcgaagaagag
accggcgagcgctccgagcatcgtcgcctgtacgacaccacggtgggccgtgccctgctg
ttccgcattctgccggaaggcgtaccgttcgcgctgatcgatcagccgatgaagaagaag
gcgatctccagcctgatcaacgaagtgtatcgccgtgcgggcctcaagcccacggtcatc
ttcgctgaccagctgatgtacaccggcttccgtctggcgacctggtccggtgcctcgatc
ggtgtcaacgacttcgtcattcccgacgccaagaccgagatcgtcgacgcggccgaagcc
gaagtcaaagagatcgaagaccagttctcgtccggtctggtgaccgcaggcgagaagtac
aacaaggttatcgacatctggtccaaggccaacgacaaggtggccaaggcgatgatggtg
ggtatctccaaggagaccgtcgtcgaccgtgaaggcaatgaagtggagcaggactccttc
aacagcgtcttcatcatggccgactctggtgcccgtggtagcgccgcccagatccgtcag
ctggcgggtatgcgtggtctgatggccaagccggacggctcgatcatcgaaacccccatc
gtggccaacttccgtgagggtctgaacgtactccagtacttcatctcgacccacggtgcg
cgtaaaggtctggcggatacggccctgaaaacggccaactccggttacctgactcgccgt
ctggtcgacgtggcccaggatctggtgatcaccgaaaccgactgtggtaccgagaacggt
ctgacgctgcacccgatcatcgagggtggcgacatcatcgtaccgctgtcacagcgtgta
ctgggccgggtggtggcgcaggacgtcatcgatccgagcaccgaagaagtgctgatcccg
cgcaacacgctgctcgacgagaagtggtgtgcgtcgctggacaccatgggggtggacgag
atcatcgtgcgctccaccatcacctgtgacaccgcgcacggcgtttgttcgtcctgctac
ggtcgtgacctggcgcgtggccatcaggtcaacatcggtgagtcggtgggtgtcatcgct
gcccagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgttcctcggcggtcgacagcgtacaggtgaagcacggcggtaaagtacgc
ctgcacaacatcaagcacgttgagcgtgccgacggcaaactggtggtggtgtctcgttca
agcgccctggccgtcgccgacgatcacggtcgtgagcgtgagtactacaagctgccttac
ggtgccgagctgtcggttcgcgacggtgacgtcgtcgacgctggtacggtcgtggccaag
tgggacccgcacacccatccgatcattgcggaagtggaaggtaaggcccagttcatcgat
ctcgacgaaggtgtcaccatgcaccgcagcgtcgatgaaatgaccggcctctcctccatc
gaggtcatcgagtcggccgcccgcccgatggccggccgcgacaagcgcccgatggtgatg
ctgcaggacgccgcaggcgagtacgtgtccgtgtccggttccaacacgccggtacagtac
ctgctgcccggcaactcgatcatctccgtggacgacggctcgaccatcggtgtgggtgaa
gtcgttgcccgtatcccggtagaagcctcgggtaacaaggacatcaccggtggtctgccg
cgcgtagccgacctgttcgaagcgcgtaagccgaaagagtcggccatcctggcggaaatc
agcggtgtggtgagcttcggtaaagagaccaagggcaagcgtcgtctgacgatcaccccg
gaatctggcgatccgttcgaagcgctgattccgaaatggcgtcaaatcgccgtcttcgaa
ggcgaagccgtcgagaagggcgaagtgatttccgatggcccgagcaaccctcacgacatc
ctgcgcctgctgggtgtagcggagctggccaagtacatcactgccgaagtacaggacgta
taccgtctgcaaggcgtaggcatcaacgacaagcacatcgaagtcatcgtgcgtcagatg
ctgcgcaaggtagagatcaccgattccggcgactctgacttcatcaccggcgaccaggca
gaactggtgcgcgtgctggagcagaacgagcgtctggagaaagaaggcaagttcccggcc
aagtaccaacgcttgctgctgggtatcaccaaggccagcttggccaccgaatcgttcatc
tcggcggcgtctttccaggaaacgacccgtgtattgaccgaagcggcggtaaccggcaag
cgcgattacctgcgtggcctgaaagaaaacgtggtagttggacgtctgattccggcaggt
accggtctgactcaccacgcagagcgtcgtcgcaagcgcgaagacgtagagcgtctgttc
aacccctcggctaccgaggttgagcaggagctgggtgctcagttgaccgccctggattca
gacgacgatctgtaa
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integrated database retrieval system
