Vreelandella venusta Y2: CLM76_06160
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Entry
CLM76_06160 CDS
T05117
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hhh
Vreelandella venusta Y2
Pathway
hhh03420
Nucleotide excision repair
hhh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLM76_06160
03430 Mismatch repair
CLM76_06160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhh03400
]
CLM76_06160
Enzymes [BR:
hhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLM76_06160
DNA repair and recombination proteins [BR:
hhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLM76_06160
MMR (mismatch excision repair)
Other MMR factors
CLM76_06160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ATH77199
LinkDB
All DBs
Position
complement(1308806..1311004)
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AA seq
732 aa
AA seq
DB search
MDDVTAILDHLNPAQREAVSAPQGNLLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYALLA
VTFTNKAAREMRTRLEALLGISMRHVWVGTFHSISHRLLRTHWQDARLPQHFQIIDSDDQ
LRLIKRLLKDYSIDDERFPPRQVQGFISGCKEEGLRPHQVNVNGDAYLAQMVELYERYQF
TCERGGLVDFGELLLRSLELLRDNPPLLNHYRERFGHVLVDEFQDTNTLQYAWLKLLTGQ
QTPMTAVGDDDQSIYGWRGAKVENIRRFEEEFPNTHTVRLEQNYRSTSAILEAANTLISH
NSERLGKNLWTDGAEGEPISVYAGFNDLEEARYIVDTIKEKVNDGFNRRDVAILYRSNAQ
SRLLEETLIRQGMPYRIYGGHRFYERLEIKNALAYLRLLLNRDDDASLERVINVPTRGIG
TRTVEIVRHHAREQSVSLWQALHDTLQDGTLRGRAGNAVQAFTNLIEQLDNDTSGLPLHE
IIDHVTARTGLIEHHQSERGEKGQARVENLEELVNAARAFTHGDAFETPEAGEGMAALEA
FLSEAALNAGDHEAEEFEDSVQLMTLHSAKGLEFPVVFIAGVEEGLFPHKMSVEEPGRLE
EERRLCYVGVTRAMQKLYLTHAETRRLHGKEVFPRPSRFLRELPPHLLEEVRLRGHVSRP
VTASRPSFAQSSIESDGDLPALHVGQRVGHPVFGEGIILNAEGEGARARVQVSFDGEGVK
WLVLGFAKLTPM
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtcacggcgatactcgatcatctcaacccggcccagcgggaagccgtcagt
gcgccccagggcaaccttctggtactggccggcgccggttccggcaaaacgcgtgtgctg
gtccaccgcattgcctggctgatgcaggccgaagggctttccccttatgccctgctggcc
gtcacgtttaccaacaaggccgcccgcgagatgcgcacgcgtctggaagccttgctgggc
atctccatgcgccatgtctgggtgggtacctttcactcgatctcgcaccggctgctgcgc
acccattggcaggatgctcgactgccccagcactttcagatcatcgactccgatgaccag
ctgcggctgatcaagcggctgctgaaagattactcgattgacgatgagcgcttcccgcca
cgccaggtgcaggggttcatttctggttgcaaggaagagggcctgcgaccccatcaagtg
aacgtcaatggcgatgcgtacctcgctcagatggtcgagctctacgagcgctaccagttc
acctgcgagcgaggcgggctggtggatttcggtgagctgctgctgcgcagcctggagctg
ttgcgcgacaacccgccgctcctgaaccactatcgcgagcgctttggccatgtgctggtg
gacgagtttcaggataccaacacccttcagtacgcctggctcaaactgctcaccggccag
cagaccccgatgaccgccgtgggcgatgacgaccagtccatttacggctggcggggcgcc
aaggtcgagaacattcgccgcttcgaagaagagtttcccaacacccataccgtgcgcctg
gagcagaactaccgctccaccagcgcgattctggaagcggccaatacgctgatcagccac
aacagcgagcgcctcggcaagaacctatggaccgatggcgccgaaggcgagcctatctcg
gtgtatgcggggttcaacgacctcgaggaagcccgctatatcgtcgataccatcaaggag
aaggtcaacgacggcttcaaccgccgggacgtggccatcctctaccgctccaacgcccag
tcgcgcctgctggaagagacactgattcgccaaggcatgccctatcgtatctacggcggc
caccgcttttatgagcggctggaaatcaagaacgccttggcctacctgcgcttgctgctc
aaccgtgatgacgatgcctccctggagcgcgtcatcaacgtgcccacccgtggcatcggc
acgcgcaccgtggaaatcgtccgccatcacgcccgtgagcagagcgtgtcgctgtggcag
gcgctgcacgacacccttcaggatggcaccttgagaggccgtgcaggcaacgccgtgcag
gcctttaccaacctgatcgagcagctggacaacgacacgtccgggctgccgctccacgag
atcatcgaccacgtcacggcacgcaccgggctgatcgaacaccatcaaagcgagcgcggt
gaaaaaggccaggctcgggtcgagaacctggaagagctggtcaacgcggcccgggccttt
acccatggcgatgccttcgagaccccggaagccggagaaggcatggccgcgctggaagcc
ttcctttcggaagccgccctcaacgcaggcgaccatgaagccgaggagttcgaagacagc
gtgcagctgatgaccctgcactcggccaaggggctggagtttccggtggtgttcattgcc
ggggtggaagaggggctgtttccccacaagatgtccgtggaggagccaggccgcctggag
gaggagcgccgcctgtgctacgtgggcgtgacgcgcgccatgcagaagctctacctgacc
cacgccgagactcgccgcctgcacggcaaagaggtgttcccacgcccgtcccggtttctc
cgtgagctaccgcctcatctgctggaagaagtgcgtctgcgcggccatgtctcgcgcccc
gtgaccgcgtcacggcccagctttgcccaatccagcatcgaaagcgacggcgacctgccc
gccctgcatgtcggccagcgggtgggccacccggtgttcggcgaaggcatcattctgaac
gccgaaggcgaaggcgctcgggcgcgggttcaggtgagctttgacggcgaaggcgtgaag
tggctggtactcgggtttgccaagctcactcccatgtaa
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