Vreelandella venusta Y2: CLM76_10630
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Entry
CLM76_10630 CDS
T05117
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhh
Vreelandella venusta Y2
Pathway
hhh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM76_10630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhh03019
]
CLM76_10630
03009 Ribosome biogenesis [BR:
hhh03009
]
CLM76_10630
Enzymes [BR:
hhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLM76_10630
Messenger RNA biogenesis [BR:
hhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLM76_10630
Ribosome biogenesis [BR:
hhh03009
]
Prokaryotic type
rRNA helicases
CLM76_10630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATH78020
LinkDB
All DBs
Position
2262235..2263947
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AA seq
570 aa
AA seq
DB search
MTSISVTSPSFGDLALLPAVLSAVEAQGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLDMQRREPQVLVLAPTRELAQQVAVSFSKYGQNLQGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPSEIERIVNRYLVNPVKVAIESRTTTGENIEQRLVRVDGGAKLEALA
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVPRITHVVNYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERAPREGASGKPAGARRERSSAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDRAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgatttctgtcacctcgccgagcttcggtgatctggctcttttgcctgccgtt
ctgtctgctgtagaagcgcagggctacgaaactccttcgcccatccaggcgcagaccatt
ccagcattgctggaaggccgcgatatgctgggtcaggcacaaacgggtaccggtaaaacg
gctgcctttgcactgccgctgctgtcgcgtctcgacatgcagcgtcgcgagccccaggta
ctggtgctggcgcctacccgcgaacttgctcagcaggttgcggtttcctttagcaagtat
ggtcaaaacctgcaggggctcgaagtggcgaccctgtgtggtggtcaagagtaccgtgag
cagctgggcgccttgaagcgcggcgctcaggtcgtggtcggtacgcccggtcgtatcatc
gaccacctggatcgcggcagcctgaagctggacggtttgtctgcgctggtgctggacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
ccgaaagatgcccagcgcgtgttcttctcggccacgctgccgtctgaaatcgagcgcatc
gtcaatcgctatctggtcaacccggtcaaggtggcgatcgaatcgcgcaccacgacggga
gaaaacatcgaacagcgcctggtgcgtgtggacggtggtgccaagctggaagcgctggcg
cgtattctggaagtggagccggtggatgcggccatcgtgttcgtacgtacacgtgctgcc
tgtaccacgctggtagagcagctgacggcgcgcggtgtcaacgccgctggcctgtcgggt
gacctggaccagagcctgcgtgagcgcaccatcactcgcctgaagcgtggcaaggtcgat
gtcctgatcgcgaccgacgtcgccgctcgtggtctggacgttccgcgtatcacccacgtg
gtgaactacgatcttccccaggacgccgaagcctatacgcaccgtatcggtcgtactggc
cgtgcgggccgcagcggtatcgcgatcaccttcgcgggcttccgtgaaggccgcaaggta
ggctggatggagcaggcaacgggtcagaaaatgaccgaaatgccgctgcctgacgaagcc
gctatccgtgcgcaccgtgatgaagtattccaccatcgcgtcgtggcagccctgaccaag
ggtgccgaagagcagcgcgcgctggtcgagcgtctggtggaagaaggtcacgacgccgtc
gagctggcctgtgcctttgctgccatggcccgtgctgacgaagcgccgattggccgtctg
caagcaccgcgcaaagagcgtgctccgcgtgagggtgcctccggcaaacctgctggtgct
cgccgcgagcgctccagtgcgcccagcgaaggcatgacccgctaccgtgtatcggtaggc
cataaagatggcgtcaagcctggccagttggttggcgcgttggccaatgaaggcggtatc
gaaggtgcccgtatcggccgtatcgatattcgcaacgccttctcggtggtcgagctgccc
agcggcctgccgtctaccattctggccaagatggcacgtgcccgtgtggccggtcgcccg
ctggaaatcagcgaagaccgtgcgcccgagcgtgcaccgcgccgtcgtcgtgacgatggc
gatgcgccggttcgccgtcgcgaacgtgcgtaa
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