Halomonas hydrothermalis: CLM76_12875
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Entry
CLM76_12875 CDS
T05117
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hhh
Halomonas hydrothermalis
Brite
KEGG Orthology (KO) [BR:
hhh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhh03019
]
CLM76_12875 (hrpA)
Enzymes [BR:
hhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLM76_12875 (hrpA)
Messenger RNA biogenesis [BR:
hhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CLM76_12875 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
NACHT
AAA_16
nSTAND3
T2SSE
SLFN-g3_helicase
AAA_25
ABC_tran
FtsK_SpoIIIE
PhoH
Motif
Other DBs
NCBI-ProteinID:
ATH78419
LinkDB
All DBs
Position
2743493..2747524
Genome browser
AA seq
1343 aa
AA seq
DB search
METEPNVTTDTHSSRTESPQDPAALLAVLDASLGDVMLRDRERLARRVSGLKRRQRDNKP
VDRGVNELRRDMAKATQLLAQREALRVALNYPDELPVVERREDILAAIREHQVVVVAGET
GSGKTTQLPKMCLELGRGRQGLIGHTQPRRLAARSVASRLADELEVALGEQVGYQVRFND
QSTPTTLVKLMTDGILLAETQHDPLLLRYDTLIIDEAHERSLNIDFLLGYLKRLLPKRPD
LKVIITSATIDVERFAAHFGTPDAPAPVVEVSGRTYPVDVLYRPLVRSEEDEEDRTLQEG
ILHAVQEIETIERQKGWLHGPRDVLVFLPGERDIRETADTLRRADLKGTDILPLYARLSN
EEQNRVFAPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPIEPIS
QASANQRKGRCGRVAEGVCIRLYDEDDFLARPAFTDPEIQRTNLASVILSMLALKLGHIE
DFPFVDPPDGRFIKDGFRLLFELGAVDDKHQLSPLGRKLAKLPIDPRLARMVLAGAERGS
LRDVLVVVSALAIQDPRERPADKRQAADQAHQRWHDPDSDFVALLNLWHGIENAREALSG
NQLRRWCREHYINYLRMREWHDTFRQLRQLLRDMDIEVPPPLPRDEDESEEQAKQARRKT
SGKLHQALLSGLLSNLGTLLENREYLGARNRKFMIHPGSGLAKKSPKWVMAFELIETTKL
FARTVAKIDPQWIEPQAQHLVKSSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRRVHYGP
IAPQESRELFIRRALVEGEFQTRGAFFAHNRALIEEVEALEDRARRRDILVDEESLFAFY
DERIPADIVNGKGFEHWRKQAEQQQPELLKFDLEALKARDAHDVTQAQYPDHLTLAGVAY
PVSYHFDPDAEDDGVTLTVPAAMLPQLPATALDWLVPGLLREKCIALLKSLPKSLRRQVV
PIPDWVDAALETLVLDERPLTEALGEFIRRRTGTRVHPDDWRLDLLPPHLRMNVRVVDHG
GKTLGQGRDVRALERRFEEAASAGAQALAEQASQAPTLEELPASPLPESRVTTQAGIRVE
AYPALVAEGGHFKVSLFDHPAKAQFAHQEGVARLAIAKLPEQVKAIKRLPGVEKCALLFA
KVGSKQALVEDLLLAVFTQVVAQHPLPRSAGELAERLATTQPQLVAHAETVLGRVEEALK
GHLDVSKILKGKLNFALALVYSDVSAQMQRLVYPGFIRDADEWLTEYPRYMEAALIRLEK
AARERGRDQMLMQDVQALEARFDARRKSERRGAAEDPTLVAFGWWIQELRVSLFAQQLGT
HMPVSAKRLEKRWEEITRGQGIQ
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgagcctaacgtgaccaccgacacgcactcttctcgcactgaatccccgcaa
gatcctgctgctttgctggcggtactcgacgcatcgctgggtgatgtcatgcttcgcgac
cgtgagcgcctggcccggcgtgtgtcgggcttgaagcgacggcagcgtgacaacaagccg
gtcgaccgtggtgtcaacgagctgcgccgcgacatggcaaaggccacgcagctgctggcc
cagcgggaagccttgcgtgttgccttgaactaccccgatgagctgcccgtcgtcgagcgt
cgcgaggacattctggcggccattcgggagcaccaggtggtggtcgtggccggtgaaacc
ggctcgggtaaaaccacccagttgcccaagatgtgtctggagctggggcgcggacgccag
ggcctgattggccacactcagccgcgcaggctggcagcacgcagcgtggcatccaggctt
gccgatgagctggaggtggcactgggtgagcaggtgggctatcaggtacggttcaatgac
cagagcacgcccacgacgctggtcaaactgatgaccgacgggattctgctggccgaaacc
cagcacgacccgctgctgttgcgctacgacaccctgatcatcgatgaagcccacgagcgc
agcctcaatatcgattttctgctgggctacctgaagcgtttgctgcctaaacgcccggac
ctgaaggtgatcatcacctccgccaccatcgacgtcgagcgctttgcggcccacttcggc
acgcctgacgcgccggctccggtggtcgaagtctcgggccgtacctacccggtggatgtc
ctttatcgcccgctggtgcgcagcgaagaggacgaggaagaccgcacgctgcaagagggt
attcttcatgccgtgcaggaaatcgagaccatcgagcgccagaaaggctggctccacggc
ccccgggacgtgctggtgtttctgcccggtgagcgtgacattcgggaaaccgccgatacg
ctgcgccgtgccgacctgaaaggcaccgacattttgccgctctatgcgcggctgtccaac
gaagagcaaaatcgcgtgttcgccccccatcgcgggcgacgtatcgtgctggccaccaac
gtggcggaaacctcgctgaccgtaccgggaattcgctatgtcatcgacccgggcctggtg
cgtatcagtcgctacagctaccgtgccaagatccagcggctgcccatcgagcccatcagc
caggccagcgccaaccagcgcaaggggcgctgtggccgtgtggccgaaggggtatgcatt
cggctatatgatgaagacgactttctggctcgcccggcgtttaccgaccccgaaattcag
cgcaccaacctggcgtcggtgattctgtccatgctggcgctgaagctggggcacatcgaa
gactttccgtttgtcgacccgcctgacggccgcttcatcaaggatggtttccggctgctg
ttcgagctgggtgcggtggacgacaagcatcagttgagcccgctgggccgtaagctggcc
aaactgcccatcgacccaaggctggcgcgcatggtgctggcaggggccgaacggggcagc
ctgcgcgacgtgctggtggtggtctcggcgctggccattcaggacccgcgagagcggcct
gccgacaagcgtcaggcggccgaccaggcgcatcagcgctggcacgacccggattccgac
ttcgtcgctttgctcaacctatggcacggcatcgagaatgctcgcgaggcgctctcgggc
aatcagctgcgccgctggtgtcgcgagcactacatcaactatctgcgcatgcgcgagtgg
cacgatacgttccgccaactgcgtcagctactgcgtgacatggatatcgaggtgccgcca
ccgctgcctcgcgatgaagacgaaagcgaagagcaggccaagcaggcgcggcgtaaaact
tctggcaagctgcaccaggcgctgctgtcgggtctgttgtccaatttgggaacgctgctg
gagaaccgcgaatacctgggcgctcgcaaccgcaaattcatgatccatcccggctccggg
ttggccaagaagagccccaaatgggtcatggcgttcgagctgatcgaaaccaccaagctg
tttgcacgcaccgtggccaaaatcgacccccagtggatcgagccgcaggcgcagcatctg
gtcaaaagcagctacagcgagccccactgggaaatgaagcgcgcccaggtggtggcgttc
gagcaggtgaccctgtttggcctgcctatcgttgcgcggcgccgggtgcactatggcccc
attgcgccccaggagtcgcgggagctgtttattcgtcgtgcgctggtcgaaggcgaattc
cagacgcgaggcgcgttctttgcccataatcgggcgttgatcgaagaggtcgaagcgctg
gaagatcgtgcccgacggcgcgatatactggtggacgaagagagcctgttcgccttctac
gacgagcgcatcccggcggacatcgtcaatggcaagggcttcgaacactggcgcaagcag
gccgagcagcaacagcccgagctattgaagttcgatctcgaggcgctcaaggctcgtgat
gcccatgacgtgacccaggcgcagtacccggatcacctcaccctggcgggcgtggcctat
ccggtgagctatcacttcgacccggatgccgaggacgatggcgtcacccttaccgtgccc
gcggcgatgctgccgcagctgcctgccactgctctcgactggctggtgcccggcctgttg
cgcgagaagtgtattgcgctactcaagtcgctgcccaaaagcctgcgccgccaggtggtg
cccatccccgattgggtcgatgccgccctggaaacgctggtgctggacgagcgccccctg
accgaggcgcttggtgagttcatccggcggcgtaccggcacgcgggttcaccccgacgac
tggcgcctcgacctgctgccgccccacctgcgcatgaatgtgcgggtggtcgatcatggt
ggcaagaccctggggcaagggcgtgatgtacgtgccctggagcggcgcttcgaggaagcc
gccagtgccggcgcccaggcgctggccgagcaggccagccaggcacccacgttggaagag
ctgcccgcatcgccgctgcctgaatctcgtgtcactacccaggcgggcattcgcgtggaa
gcctacccggccttggtcgctgagggcgggcacttcaaggtcagcctgttcgatcatccc
gccaaggcgcagtttgcgcatcaggaaggggtggcgcggctggccattgccaagctgccc
gagcaggtcaaagccatcaaacggctacccggagtcgaaaagtgcgcgctgctgttcgcc
aaggtaggcagcaagcaggccctggtcgaggatttgctgctggcggtctttacacaggtc
gtggcacagcatccgctaccgcgttctgccggtgagctggccgagcggctggcaacgacc
cagcctcaactggtggcccatgccgagaccgtgctggggcgtgtcgaagaggcactgaaa
ggccatcttgacgtcagcaagattctgaaagggaaacttaattttgcactggccctggtc
tacagcgatgtcagtgcgcagatgcagcggctggtttacccaggcttcattcgtgatgcg
gacgagtggctcacggagtatccacgctacatggaagccgccttgattcgattggaaaag
gccgcccgagagcggggcagggaccaaatgctgatgcaggatgtccaagccctcgaagcg
cgcttcgacgcacggcgcaaaagcgagcgccgtggcgcggccgaagacccgacgctggta
gcgttcggttggtggatacaggaattgagagtgtcgctgtttgcgcagcagttgggcacg
cacatgccggtatcggcaaaacgcctggagaagcgttgggaagagatcacccgcgggcaa
ggcattcaatga
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integrated database retrieval system
