Vreelandella venusta Y2: CLM76_14650
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Entry
CLM76_14650 CDS
T05117
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hhh
Vreelandella venusta Y2
Brite
KEGG Orthology (KO) [BR:
hhh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhh03019
]
CLM76_14650 (hrpB)
Enzymes [BR:
hhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLM76_14650 (hrpB)
Messenger RNA biogenesis [BR:
hhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CLM76_14650 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
Flavi_DEAD
ResIII
HA2_N
Motif
Other DBs
NCBI-ProteinID:
ATH78746
LinkDB
All DBs
Position
3133662..3136106
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AA seq
814 aa
AA seq
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MPELPIEQHLASIEDALDTHSRLILVAQPGAGKTTRVPLRLIERPWARGQRLLMLEPRRV
AARLAATYMAAQLGEPVGKRIGYRMRGDQRVGPDTQLEVITQGVLTRMLQDDPLLEGVAG
ILFDEFHERSIESDLGLALAMDVQQSIRDDLRLVVMSATLDIEALRTLLGEHTPVIESSG
RAFPVTTLYRPPVGGETAAMAARSVVEEAVALDDAQDILVILPGVADIRRLAQALAASSL
TLDIRTLHGGMTLDAQQAALSPGTQRRVIISTSITESSLTVDGVNVVIDAGLERVPEFSA
QTGLTRLTTRRVNRASADQRRGRAGRQQSGYCYRLWAQDQPLVAHREPEMLQADLSRLAL
ELALWGVNAPDALAWLSPPPKGAWQSARDLLQRLGLLDQAGGLTPLGQQCGTLPVEPRLA
AMLVRSKAGENTALACALAALLEGRERLEGTLQEALAARLKTPSAFPAWHQEFKRLAALM
GCTVPSRLDLEPLGELLAVAFADRVAQLMNLGRFKLANGKTATLSPQHPLANEPYLVAVH
LDSASRDAPIQRAVPLSEQALRALYPATARWHERVAWQEPPGKLVAETVQCHGELVLAAR
PLQTLPAAAAEQALMSALQRRPSALLDDEVRRLQGRMALLKRTFPRQWPDWSDAALVDDL
DEWLAPYVAGMTRLAQVEKLPFARCLLDTLTWEAQSALARLAPIGLTAPSGNTITLDYLP
CLEGRPPVLALKLQEAFGWQETPTVAEGQVAVMIHLLSPARRPLQVTQDLRSFWLTGYPE
VRKEMRGRYPKHPWPEDPLTAQATALTKRRLGNA
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgcccatcgagcaacacctggcgtcgatcgaagacgctctggacacccac
tctcgcctcattctggtggcgcagcccggcgcgggcaagaccacccgagtgccgttgcgg
ctcatcgagcgcccttgggcgcgtggccagcgcctgctgatgctcgaacctcggcgggtg
gcggccaggctggcggcaacctacatggccgctcagttgggtgagccggtgggtaagcgt
attggctatcgcatgcgcggtgatcaacgggtggggcctgacacgcagctggaagtgatc
actcagggggtgctgacgcgcatgctgcaggatgacccgctgctggagggggtggccggc
attctcttcgatgagtttcatgaacgcagtatcgagtccgacttgggtctggcgctggca
atggacgtgcagcaaagcattcgtgacgatctccgcctggtggtgatgtccgcgacgctg
gatatagaggcgctgcgtaccttgctgggcgagcatactccggtgatcgagagcagtggc
cgcgcttttccggtcaccacgctatatcggccacctgttggcggtgagaccgccgccatg
gcggcgcgcagtgtcgtggaggaagccgtggcgctggacgatgcccaggacatattggtc
atcttgcccggcgtggcggacatccgccggctcgctcaggcgctggcggcttcatcgctg
acgctggatattcgcacgctgcatggcggcatgacgctggatgctcaacaagcggcactt
agccctggtacgcagcggcgggtgatcatttccacctcgatcaccgaatcgagcctgacg
gtcgacggcgtcaacgtcgtcattgacgcaggccttgaacgggtgcccgagttcagtgcc
caaacggggcttacgcgattgaccacccgtcgcgtcaaccgcgccagcgccgaccagcgg
cgtgggcgcgcgggtcgccagcaatcgggctactgctatcgcctgtgggcacaggaccag
ccactggtcgcgcaccgtgagcccgagatgctgcaggccgacctctcgcggctggcgctg
gaactggcgctatggggcgtcaatgcacccgacgcgctggcctggctatctccacccccc
aagggcgcatggcagagcgcgcgcgatcttctccagcggctggggctgctcgatcaggcc
ggcggtctgacaccgctggggcagcagtgcggtaccttgccggtggagcctcgcctggcc
gcgatgctggtgcgctccaaggctggagaaaataccgcgctggcctgtgcgttggcagcg
ctgctggagggccgggagcgtcttgagggaacattgcaggaagccctggccgctcggctg
aaaacaccttctgcattcccagcctggcaccaggaattcaagcgtctggcggcgctgatg
ggatgcacggtgccgtcacgccttgatcttgagcctctgggtgagctgcttgcggtggcg
tttgctgaccgagtggcccagctcatgaacctcgggcgtttcaagctggccaatggcaag
acggcaacgctatcgccgcagcacccgttggccaacgagccgtatctggtggccgttcac
ctcgacagcgctagccgtgatgcaccgatccagagggcagtgcccctctccgaacaggct
ttgcgagccctttatccggcgacggcgaggtggcacgaacgagttgcctggcaagagccg
ccaggcaagctggtggccgaaacggtgcagtgtcacggtgagctggtattggcggcacgc
ccgctacagacgctgcccgccgccgctgccgaacaagcgctgatgagcgctttgcagcgc
cgcccttcagccttgctggatgacgaggtcaggcgcttgcaggggcgcatggcgctgctc
aagcgtactttccctaggcaatggcccgactggtccgatgctgcgttggtggatgatctg
gacgagtggctggcgccttacgtggccggtatgactcggctggcacaagtcgaaaaactg
cctttcgcgcggtgcctgctggatacgctgacctgggaagcgcagagtgcgttggcacgt
ctggcgcctatcggccttaccgcgccgagcggtaacacgattacgctggactatcttccc
tgcctggagggcaggccgccggtgctggcattgaagctgcaggaggcctttggctggcaa
gaaacaccgaccgtagccgaagggcaagtggccgtgatgattcacctgctgtcaccggcc
cgacgccctctgcaggtaacccaggacttgcgcagcttctggctgaccggctacccggag
gtgagaaaagagatgcgcgggcggtatccaaagcacccgtggccagaagaccccttgacg
gcgcaagccacggcactgaccaagcgccgcttgggcaacgcttga
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