Halomonas hydrothermalis: CLM76_16735
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Entry
CLM76_16735 CDS
T05117
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hhh
Halomonas hydrothermalis
Pathway
hhh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM76_16735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhh03019
]
CLM76_16735
03009 Ribosome biogenesis [BR:
hhh03009
]
CLM76_16735
Enzymes [BR:
hhh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CLM76_16735
Messenger RNA biogenesis [BR:
hhh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLM76_16735
Ribosome biogenesis [BR:
hhh03009
]
Prokaryotic type
rRNA processing factors
CLM76_16735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATH79141
LinkDB
All DBs
Position
3573124..3576405
Genome browser
AA seq
1093 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFIKDVSGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGR
FLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSSEELQWDLD
YLVQVWESITTESAKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPDIHAEALAFIR
QVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSIDINS
ARATRGSDIEETALQTNTEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDA
LKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSIMRL
IEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVILPSPDMDTPHYDVQ
RLRDDHLDEDDSHTLSSFELSTDTEIGKEPPPSFAAPAQRAEAAVKSIAHNAPAPESLQT
EEAPAKPAAAVAPAEQPSVLGRFIRGFAKLLGGDETSTTASQEASSTNRKPEQPAAPSRP
PRNERRQKPAQERQPQERSAPERQENSASRDQRNETAKAPAARNDDANDKRSGPSRTRNR
RRHPQQDDGRAQESTPRNARQKETAKESSQNDAASSAPQPEQRREKPRDNKPKHDDSRPE
AAQQDEPQKDDGKPKRTRNNPRQRSRKQALSPQAEAEQLKLQAEAQQAPEEAPAPAAADA
ETPAKKAASAPETATQATAAQETATQEPAAQSPNDAAEAHTDTRQEATEETAAEDTTATA
RASSADKARKSTRQRRQPAIRDEAAKEANASGDDNGTPAAATEEPTAPREEQPTSSTAQE
PSAAVEKEPSAVFAEKPSAVTEEKPSTTAAEAPSADEGQSSATTEEPSAVVEKEPSAVVE
EKSSAVVEEKSSAVVEEKASEAVEEEPSKASSVVAAEDTSAGTEAQSSVTTEEKPATAEE
QAPTEAAQERSTPAAQNAAAEKASEAPQAAADANASGEPAADEEASKPRRRRRRAHNDPR
EQRKQQAQQNSPE
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgcttattaatgcgacccagcccgaagagctgcgggtcgccctggtagacggacagcgc
ctttacgatctggatatcgagtccggcgcacgcgaacagaagaaagccaacatctaccgg
ggcaaaatcacccgggtagaaccctcactcgaagccgccttcgtcgactttggcgccgag
cgccacggctttctgccgctgaaagagatctctcgcgaatacttcatcaaggatgtttcg
ggccgccccaacatcaaggaagtattgaaagagggccaggaagtcatcgtccaggtagac
aaggaagagcgtggcaacaagggcgctgccctgaccaccttcatcagcttggccggacgc
tttttggtactgatgcccaacaaccctcgtgccggtggcatatcgcggcgtatcgaaggc
gatgaccgcagccagctcaaggatgccatgggccagctgacggtacccgacaagatgggc
ctgatcgtgcgtaccgccggcattggccgcagctccgaggagctgcagtgggacctggac
tacctggtacaggtgtgggaatcgatcaccaccgagtccgccaagcgccctgcgcctttt
ttgatctaccgcgaatccaacgtcatcatccgcgccatgcgcgactacctgcgccaggac
attggcgaggtgctgatcgacagtcccgatatccacgccgaggcgctggcgttcatccgc
caggtgatgccttcctaccagcaaaagatcaagctgtatgccgatgaagtgccgctgttc
tcgcgcttccagatcgaatctcagatcgaaacggcctaccagcgggaagtgaagctgccc
tccggcggctccatcgtcatcgatcacaccgaagcgctggtctccatcgacatcaactcg
gcccgcgccacccgcggcagcgatatcgaagagaccgccctgcagaccaacaccgaagcc
gccgacgagattgctcgccagctccgcctgcgcgacattggtgggctagtggtcatcgat
ttcatcgacatgggccctgcccgcaaccagcgtgaagtcgaaaaccgcatgcgtgatgcg
ctcaagctggatcgcgcccgcgtacagatcggccgcatttcgcgcttcggcctgatggaa
atgtcgcgccagcgcctgcgcccctcgctgggtgaaaccagcggcgtggtctgcccgcgc
tgtaacggccagggcaccatccgcgatgtgcgctcgctgtcgctctccatcatgcgcctg
atcgaagaagaggccatgaaagagcgcagcgcccagatccgcgccatcctgcccgtgccg
gtcgccacttatctgctcaacgaaaagcgcagcgtgctggcggatatcgaatcacgccag
ggcgtacgcgtggtcattctgcccagcccggacatggacaccccgcactacgacgttcag
cgcctgcgcgatgaccacctggacgaagacgacagccacaccctgtcgagcttcgagctt
tccacggacaccgagattggcaaagagccgcctcccagcttcgcggctccggctcagcgg
gcagaagccgcggtcaagagcatcgctcacaacgctccggcccccgagtcgctgcaaacc
gaagaagcgcctgccaaaccagccgcagccgtggcgcccgcagaacagcccagcgtactg
ggccgcttcattcgcggttttgccaaactgctgggtggcgatgagaccagcacgacggcc
tctcaggaagccagctcgacgaaccgcaagcccgagcagccggcagccccaagccgcccg
ccgcgcaatgagcgtcgccagaagcctgcgcaagagcgccagccccaggagcgttcagca
cccgagcgtcaggaaaacagcgcctcacgcgaccagcgcaacgagaccgccaaggcacct
gctgcccgcaacgacgatgcaaacgacaagcgcagcggccctagccgcacacgcaaccgt
cgccgtcatccgcagcaggacgacggccgggctcaggaaagcacgccccgcaacgcgcgt
cagaaagagactgccaaggagtcgtcgcagaacgatgctgccagcagcgccccgcagccg
gaacagcgtcgcgagaaaccccgcgacaacaaacccaagcacgacgatagccgcccggag
gccgctcagcaggacgagccgcaaaaggatgacggcaagccgaagcgcacgcgcaacaac
ccgcgccagcgttcacgcaagcaggcactgagcccacaggccgaagccgagcagttgaag
ctccaggcagaagcccagcaggcacccgaggaagctcctgccccagcggcggcagacgca
gaaacacctgcaaagaaagccgcgtcagcgccagaaacggcgactcaagcaaccgctgct
caagagacagccacgcaagagccagcggctcaatcgccaaacgacgcggcagaagcgcac
actgacacacgtcaggaggccaccgaagagaccgcggcagaagacaccacggccaccgct
cgcgccagcagtgcggataaagcacgcaagtcaacgcgccagcgccgtcaacctgccatt
cgcgacgaagcggccaaggaagccaacgcgtctggagacgacaacggcacccccgccgca
gccacagaagagccgacagcgccacgtgaggaacagccaacctcgtcgacggctcaagag
ccttcagcggcggtagagaaagagccctcagcggtgttcgcagaaaagccctcagcggtt
actgaagaaaagccctcaacgaccgcggcagaagcaccttctgccgatgagggccaatct
tccgccactactgaagagccttcggcggtagtagagaaagagccttcggcggtggttgaa
gagaaatcttctgcggtggttgaagagaaatcttctgcggtagttgaagaaaaagcctca
gaggccgttgaagaagagccttcaaaagcgtcttccgtagtagccgcagaagacacctca
gcaggcactgaagcgcaatcttccgtcaccactgaggaaaagcccgccacggccgaggag
caagcgcccacggaagcggctcaggagcgctcgacgcctgctgcacaaaacgcagcagca
gagaaagcctccgaagcccctcaggcagcggccgacgccaatgccagtggcgagcctgcc
gctgacgaggaggcctccaagccacgtcgtcgccgccgccgggctcataacgacccgcgt
gaacagcgcaagcagcaggcccagcaaaactcacccgagtaa
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