Haloarcula hispanica ATCC 33960: HAH_0346
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Entry
HAH_0346 CDS
T01597
Symbol
recJ1
Name
(GenBank) RecJ-like exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hhi
Haloarcula hispanica ATCC 33960
Pathway
hhi03410
Base excision repair
hhi03430
Mismatch repair
hhi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HAH_0346 (recJ1)
03430 Mismatch repair
HAH_0346 (recJ1)
03440 Homologous recombination
HAH_0346 (recJ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhi03400
]
HAH_0346 (recJ1)
DNA repair and recombination proteins [BR:
hhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HAH_0346 (recJ1)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HAH_0346 (recJ1)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HAH_0346 (recJ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AEM55972
UniProt:
G0HSE6
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All DBs
Position
I:325075..326538
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AA seq
487 aa
AA seq
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MTTTGPVPALADRAAACADRLRAADRVLLASHIDADGLTSAAIATAALSRAGIPVETVFK
KQLDAAEIESIAAREYDTVLFTDFGSGQLDVISEHVAAGNFEAIIADHHQPSAPDDCHSD
AVVDTDGYADFETHLNPLLEGINGASELSGAGAAYVLARALSTGETDNRDLAALAVVGAV
GDMQAVGGELVGANAGLVEEGIAADVLEEGTDLSLYGKQTRPLPKLLEYATEVPIPGISN
DQAGATRFLEGLGLDLKADGDWRTWADLSDDERQTVASGLVQRAVERGVPADKIETLIGT
TYTLTAEPRGTELRDASEFSTLLNATARYERADVGLAVCLGERDAPLERARTLLSNHRRN
LSEGLTLVKERGVTQAGTVQWFDAGDAIRETIVGIVAGMALGTDGVDSDKPIIAFASTDE
DETKVSSRATGPLVGRGVDLSVVMRDAAQAVGGDGGGHDIAAGATIPTGEESAFIEAADE
IISEQVS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgactacgaccggccccgttccagcgctcgccgaccgcgcggccgcctgcgccgaccga
ctccgggcggccgaccgcgtgttgctggcctcccacatcgacgccgacgggctgaccagc
gccgccatcgccaccgcggcgctgtcgcgggccggcatccccgtcgagaccgtgttcaag
aagcaactcgacgccgctgagatcgagagcatcgcggctcgggagtacgacaccgtgctg
ttcacggacttcgggtccggccagctcgacgtgatctccgaacacgtcgccgcgggcaac
tttgaggcgatcattgccgaccatcaccagccgtcggccccggacgactgccactccgac
gcggtcgtcgacaccgacggctacgccgacttcgagacgcatctcaatccgctactcgaa
ggtatcaacggcgcgtcggagctctcgggtgcaggcgcagcgtacgtccttgcccgcgcg
ctctcgaccggggagactgacaaccgcgacctcgccgcgctggcggtcgtcggcgcagtc
ggggacatgcaggccgtcggcggggaactcgtcggagccaacgccggtctcgtcgaggag
ggcatcgccgccgacgtgctggaggagggcaccgacctctcgctgtatggcaaacagacc
cgaccgctgccgaagctacttgagtacgccacggaagttccgattccagggatttcgaac
gatcaggctggcgcgacgcggttcctcgaaggcctcggtctggacctgaaagccgatgga
gactggcggacgtgggcggacctctccgacgacgagcgccagaccgtcgccagcgggctg
gtccagcgtgccgtcgagcgcggcgtcccggcggacaagatcgagacgctcatcggcacg
acctacacgctgactgcggaaccgcgcggcacggaactccgggatgcgagcgagttctcg
acgctcctgaacgccacggcccgctacgaacgagcggacgtgggactggcggtctgtctc
ggcgagcgcgacgcaccgctggagcgggcgcggacactgctgtcgaaccaccgccggaac
ctctcggagggactcacgctcgtcaaggagcgcggcgtcacccaggccgggaccgtccag
tggttcgacgccggtgacgccatccgcgagaccatcgtcggcatcgtcgccgggatggcg
ctggggaccgacggcgtcgattcggacaagccaatcatcgcctttgccagcaccgacgag
gacgagacgaaagtgtcctcgcgggcgaccggcccgctggtcggccgaggcgtggacctc
tcggtcgtgatgcgcgacgccgcccaggccgtcggtggcgatggcggcgggcacgacatc
gcagcgggcgcgactatcccgaccggcgaggaatcagcgttcatcgaggcggccgacgag
attatcagcgagcaagtctcgtaa
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