Hippoglossus hippoglossus (Atlantic halibut): 117751777
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Entry
117751777 CDS
T07778
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117751777
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hhip04990
]
117751777
Domain-containing proteins not elsewhere classified [BR:
hhip04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
117751777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117751777
NCBI-ProteinID:
XP_034424571
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All DBs
Position
18:8431443..8450760
Genome browser
AA seq
1666 aa
AA seq
DB search
MGTGDYICVTLRGGAPWGFTLTEGEGDTYRPFLITQVEEGGRAFSAGVQEGDEVVSLNGE
PCADLTLLRALALIETSIDCLQLLLKRYGSITEDDESDTYCGERESSSDALASTTLHILS
PKHRSQSPRELYIAESQDEAYYGELDSNSESPKGPQLFCTQLDAPPSDGQRGREPVFREK
EVRQCFSPGNVVELQVSLSEQTSDRAGCSSLGSALGVEGGLSNREVIETIHTSTISHRLP
CPVREPLGQHGVVLGSPSVLGQVEVILQQPSASGAGRGILSVGGPRVSGSVGSQSEGEEG
GGHCEGDPGSFTVSFGIPTDEASQAAEQDSDSEGDPDKPNKHRARHSRLRRSESLSEKQV
KDHKSKCKRIALLLTAAPPNPNNKGVLMFKKHRQRAKKYTLVSYGTGEDEPENSDDEDEE
DEKQETHTVEFTLVAPNDSDLDKHFLTNVHSSKGVLTINWDKGLLEIERNLNNKAEMECL
PDTKGKGALMFVQRRQRMDEISAEHDELRRQGIPVEAVPEPEKKTMEQSYMQSTTEGHAY
MDVNVHQQSQQQHQCQQYQEQQFHEQQHGYQQQQQSYQQQQQNYQQQQEYQQYQQQQYEQ
QQVYQQQQVYQQQQEYHQEHQQMQQYSSNVNGTVQHQANEMQSSFSNRTAKPFSVEKMAA
TPFSPAMCGANEDSVGQGEELASRDERIATPASRTGLLMDARKRNTGKQMFTFKEAPKVS
PNPALLNLLNKGDKKLGFESGPEEDYLSLGAEACNFLQSPRAKQKNPPPVAPKPAIDPSS
PPWSPQIEMNNQDMAQCAENSVSTPAAAPTTDTTPAPEQEPTPAPAPEPSPPPAPAEAAA
STNTEEQHTWTLSEPESQKEPLQVTTQEENCQINSDPQPEPAPVTTWAPAQSQSQQASTN
SWHPVQVQPQEPPPSQSPPQLPWVTRQNTQTQAQPPPPTNTWTPQIQPSWSQPQEPAQAQ
THAQATWAQPPEQPQPHPQVQPPWAQPLEQPQPQPQVQQPWAQPLEQPQPQPQAQPPWAQ
PLEQPQPQPQAQPPWAQPLEQPQPQPQVQPPWAQPLEQPHIQQMQPTWGQPQEPVQQQTQ
APWAKPLEADTQPQPPWMQPSQQKSQVQPPWVQQAQPESEPQSPWVQQQQNQAPQQAWPQ
AQAPGQSQPPWVSAQPQQQQQPSINAWPPSQAQAQAQPPWMQAAQAQPQVQPQANLNPWA
PVPAQAQPQPSWPQQPLGHGQHSMNSWAQEQNQAQHQPHWAQPAPPQSTPQPNWQPATAK
SPPQPSTNTAWPPAQTQPQTHWAPESQQTPVNVSTSMVNTRPSPKPWLPPQNAPQNRTPP
SPPQRMHSFTIRQRDSPPINPMATILNPSSAGPAYEMPIVRGKGADMFAKRQSRMEKYVV
DSETVEANKACRSTSPTVSLPNEWKYSPNVRAPPSRAYNPMQSPSYPPAATKQLPQSSPA
SKDKKKAKGKPAPKLNVIDVMKHQPYQLDSSLFTFGPAVVAPKPPAPKPDSSPPNPPAEN
QPISYEQMAPIQPTGPLNAPYPQQAYGMPMQPMMHEGHYQLTPANVYANPTAYQQPPAGP
YQQSYNPQYQQPAPPVYHPQAPQPSNPSYQQAPQVPYPPASSPPYMAAPSVPYQPLPPSS
FVVPSFPVAARPESASGGNPVAAPKPRFTAKKSTAQVWKPTAVDKE
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggggattacatctgcgtgacgctgcgtgggggtgcaccctggggattcacc
ctgacagagggagagggagacacctacagacctttcctcattacacaggtggaagaagga
ggccgcgccttctcggccggagtgcaggagggtgacgaggtggtgtcgctgaacggagag
ccgtgcgctgatctcaccctcttacgggcccttgccctcatcgagacgtcaatcgactgc
ctgcagctgcttctcaaaagatacggctccattactgaagacgatgaatcagacacatat
tgtggtgagagggaatcttcgtctgatgctttagcgagcaccaccctccacatcctctcc
ccaaagcacagatcccaaagcccgagggaactctacatagccgagtcccaggacgaggcc
tactatggggagctggacagcaactcagagtcccccaagggaccccagctgttttgcacc
cagctcgatgctcccccgtctgatggtcagagaggccgagagcctgttttcagggagaaa
gaagtacgacagtgcttctcccctgggaacgtggtggagctccaggtttccctgtctgag
caaacgtcggaccgcgcgggctgctcctctcttgggagtgcactcggggtcgagggggga
ctctcgaacagggaggttatcgagaccatccacacctccaccatatcgcaccgtctgccg
tgccccgtgagagagccactgggccagcatggggtggtgctcggctccccctcggtgctg
gggcaggtggaggtcattttgcagcagccatcagcatccggggcagggaggggcatcctg
agcgtgggtggccccagggtcagtggaagcgttggatcccaaagtgaaggggaagaagga
ggagggcactgcgagggagaccctgggtcttttacggtctcatttggaattcccacagat
gaggcgtcacaggcagcagagcaggactctgactctgagggggatccagacaaacctaac
aagcatcgggcaaggcactccaggctcaggcgtagcgagagtctgtccgagaagcaggtg
aaggaccacaagtccaaatgtaaacgtattgctctcctcctcacggctgctccgcccaac
cccaacaacaaaggggtgttgatgttcaagaaacatcggcaaagggccaagaagtacacg
cttgtgagctacggcacaggagaggacgaaccagagaacagcgacgacgaggacgaggaa
gacgaaaaacaagaaacccatactgttgaattcacccttgtggctccgaacgattctgac
ctagataagcatttccttactaatgtccacagtagcaaaggtgtgctgactatcaactgg
gacaagggtctccttgagattgaaaggaacctgaacaacaaagcagagatggagtgtttg
cctgataccaagggaaagggtgcccttatgtttgtccagcggcgtcagaggatggatgag
atttctgctgagcacgatgagcttaggcgccaggggattcccgtggaagcagtgccggag
cctgagaagaagacaatggagcagtcctatatgcagtcaacaacagagggccatgcttac
atggatgtaaatgtacaccagcaaagccaacagcaacaccagtgccagcagtatcaagaa
caacagttccatgagcaacaacatggctaccaacagcaacaacaaagctatcaacagcag
caacagaactaccaacagcagcaagaataccaacagtaccagcaacagcagtatgaacag
cagcaagtgtatcaacagcagcaagtgtatcagcagcagcaagaatatcaccaagagcac
cagcaaatgcagcagtattcttcaaacgtcaatggcacagtccaacatcaagccaatgaa
atgcagagttctttcagcaatcgcactgcaaagcctttctcagttgaaaaaatggcggct
acccctttttctcccgcaatgtgtggggccaatgaagattctgtgggccaaggagaggag
ctagcatcccgcgatgagcgcattgctacccctgctagtaggactggccttctgatggat
gcaaggaaaagaaatactggcaagcaaatgttcacatttaaggaagccccaaaagtgtca
cctaacccagcattactgaacctcctcaacaagggtgataagaagttgggtttcgagtca
ggacctgaggaagactacctcagccttggggctgaggcttgtaatttcctccagtctcca
cgagctaaacaaaagaatcctccaccagtggctccaaagcctgcgatcgaccccagctct
cctccttggtccccacagatagaaatgaacaaccaggacatggctcagtgtgctgaaaat
agtgtttccacacctgctgctgcccccaccacagacactactcctgctccagagcaagag
ccaacccctgcacctgctcctgagccctctccccctcctgcccccgcggaggctgctgcc
agcaccaatacagaagagcagcacacgtggactctctcagagcctgaatctcaaaaagag
cctctccaagtgacaactcaagaagaaaattgtcaaattaattctgatccgcagcctgag
cctgcacctgtaaccacctgggctccagcacaatcacagtcacaacaagcatctaccaat
tcctggcatccagttcaagtgcaaccacaggaaccacctccaagtcagtccccgccacag
ttaccttgggtgacaagacaaaatactcagacccaagcccagcctccaccccccacaaac
acttggacccctcaaattcagccatcctggagtcagcctcaagaaccagcacaagcccag
acacatgctcaggcaacctgggcccagcctccagagcaaccccagcctcatccacaggtc
caaccaccatgggcccagcctctagagcaaccacagcctcagccacaggttcagcaaccc
tgggcccagcctctagagcaaccacagcctcagccacaggcccaaccaccctgggcccag
cctctagagcaaccacagcctcagccacaggcccaaccaccctgggcccagcctctagag
caaccacagcctcagccacaggtccaaccaccctgggcccagcctctagagcagccacac
attcagcaaatgcaaccaacttggggtcagcctcaagaaccagtgcagcagcagacccag
gccccatgggcaaagccattagaggcagatacacagcctcaaccaccatggatgcaacca
tcccagcagaaatcccaagtacaacctccttgggttcaacaggctcagccagaatccgag
ccacagtcgccatgggttcaacaacaacagaaccaggctccacaacaagcttggccacag
gcccaggcacccggtcaatcacagccaccttgggtttcagctcagcctcagcagcaacag
cagccttcaattaatgcatggccaccatcacaagctcaagcccaagctcagccaccgtgg
atgcaagcagcccaagcacaacctcaagtgcagcctcaagccaatttgaatccatgggca
ccagtacctgcccaggctcagccccaaccatcatggccccagcaacctctagggcatgga
cagcactcaatgaattcttgggctcaagagcaaaaccaggcccaacatcaaccacattgg
gctcaaccagctccaccccagtccacaccacagccaaactggcaaccagccactgcaaag
tctccaccacagccatcaacgaatacagcctggcctccagctcagactcagcctcagaca
cattgggcaccagagtcacagcaaacacctgtgaatgtttccacgtcaatggtgaacact
cgtccttctccaaaaccatggcttccaccacaaaatgccccacaaaaccgcactccaccc
tctccaccccagcggatgcactcttttaccatacgtcaaagagattcaccaccaatcaac
ccgatggccactatcttaaacccatcttctgcaggtccagcttatgagatgccaattgta
agagggaagggagctgatatgtttgccaagagacagtctcgtatggagaagtatgttgtg
gactccgagactgtggaagcgaacaaggcgtgccggtcaacatcaccaactgtctcctta
ccaaatgagtggaaatatagtcctaatgtacgtgctccaccttcgcgggcgtataatcct
atgcagtccccttcttatcccccagcagcgacaaagcagctccctcaatctagtcctgca
tccaaagataagaaaaaagccaaagggaaacctgcccctaaacttaatgttatagatgtg
atgaagcatcaaccatatcaacttgattcctcactctttacttttggtccagcagtggtg
gctcccaagccccctgcgcctaagcccgacagttcccctcctaacccccctgctgaaaac
caaccaattagttatgagcaaatggctcccatccagccaactggaccacttaatgctcca
tacccccagcaggcctatgggatgcccatgcagccaatgatgcatgagggccactaccag
ctaaccccagctaatgtttatgccaaccctactgcttatcagcaaccccctgctggccct
taccagcaatcatataacccacagtatcaacaacctgccccacctgtttatcatccccaa
gctcctcaaccttcaaacccttcctaccaacaggcaccgcaggttccttacccaccggcc
agcagccctccctacatggcggctccttcagtgccttaccagccgctgcctcccagtagc
tttgtggttcctagtttccctgtggctgctaggcctgaatctgcatcaggtggcaaccct
gtagctgctcctaagcctagatttacagccaaaaagagcacggctcaggtgtggaagccg
acagcagttgataaagagtga
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