KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117751821
Entry
117751821         CDS       T07778                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510  Focal adhesion
hhip04512  ECM-receptor interaction
hhip04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117751821 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117751821 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117751821 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hhip04147]
    117751821 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:hhip00536]
    117751821 (col4a6)
Exosome [BR:hhip04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117751821 (col4a6)
Glycosaminoglycan binding proteins [BR:hhip00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117751821 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117751821
NCBI-ProteinID: XP_034424665
LinkDB
Position
18:complement(14136260..14225030)
AA seq 1694 aa
MKFLICVVVVALAVRSAHGGTDFDEPCAGRDCSRGCKCNPEKGSRGRPGPLGDVGQSGPE
GPRGTLGPVGPKGEKGQIGLRAPSGPKGDKGPMGVPGFQGTDGVPGHPGLEGGRGLPGPD
GCNGTRGEPGDPGYGTGSPGYTGPAGPLGIKGQKGEPRYFSNGGSGSYPGQPGPDGRPGI
RGPDGPSGSPGPQGPEGYSGPPGPPGPPGLMGSRSDGYQGEKGDKGDSGLPGPSGTPGDG
SLRSEQTLTIYKGDKGEPGFKGIQGLAGNPGQPGPFSYRGEVGEKGIPGYPGARGAPGFN
GPPGALGQQGYGGNPGFPGQPGYIGPKGDLGDPGPPGPSVYVNGPSNYVQGLPGDPGLNG
LPGAPGDGGSPGYPGPPGPPGSVLDPTGRGGTPGFPGIPGPKGEKGNGGLPSYGQEGRPG
SSGLPGAQGPRGPPGPTSSAKGTGYAGQPGLPGSRGQPGGTGYNGLRGDPGDCNCRGGGT
TGLPGLRGPPGVNGGPGFGGRKGDSGDPGSPGFGGGQGPPGRQGGPGFFGRKGEKGASYY
RGPDFGVKGELGTPGPRGPNGETGKPGRDGLPGFPGGPGPPGDGGYGTVGEKGFPGYPGA
KGRPGGPGYPGSGSGGAPGTRGADGDPGIPGSPGSTGAPGPPGENSCGGVNDVGEGTGQS
RSCDTADAGDPGLPGLPGRPGPKGRPGSSNQPGRPGFDGSKGDRGEPGTGGQPGSPGFPG
PRGDSGGPGNPGQGFDGGRGKDGLPGRPGAKGQPGEVLGATPGVPGRDGSPGLPGDKGQP
GTPAGPGSPGFDGRSGVPGLKGERGVDGLPGFPGSPGPPGEPRGGIPGQPGLPGSKGLGG
SPGCQGYPGRKGDIGDPGFPGPAGMKGTPGQPGTPGSPGSRGTPGPPGPGTRDGIPGIPG
RKGERGFPGLMGFPGLPGRPGSPGFPGGKGLPGGPGRDGLPGGPGYHGQKGERGYTGRSG
LPGIPSRLGYVEKGDPGNPGSSALHGFPGPRGDKGLPGLPGRQGLPGLPGYAEQSKGQPG
EPGYPGRAGGPGYPGPKGEAGIMGFPGMSGARGDDGGTGFPGNPGEPGRPGAKGIPGETY
GYPGGPGSKGQPGDSGFPGGRANDGAPGDNGFPGSPGYSGAKGAPGEGGRPGITGSPGFP
GPKGQSFYPGRRGQDGGPGLPGSPGGPGAKGLSGSPGLDGLNGLGGPKGLPGTPGGNAGG
IPGTPGIPGLKGERGVSYPGAPGYPGGKGERGDPGGSGLPGFPGRPGLPGESVGSNFPGP
TGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDPGLPGFPGSPGRKGETGGPGGPGS
PGFPGIKGERGESGYSGGPGLKGFNGDSGYYGNKGAKGLQGRTGRKGYPGASLPWIPTAQ
PLGELGFPGDGGTPGSPGEPGQPGESGPSGAKGPPGPVGKLGRTGSTGPSGTVGDGGPPG
FPGPTGDQGLPGNTGRPGLPGGVGRGSSIGYTLVKHSQDAQVPMCPQGMAQLWEGYSLLY
VEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRNDKSYWLSTTAPIPMMPVA
EEQIRPYISRCSVCEAPSQAVAVHSQDMNIPSCPPGWRSLWIGYSFLMHTAAGAEGGGQS
LVSPGSCLEDFRATPFIECNGAKGSCHYFANKYSFWLITVDPSQEFRYSPVQETLKGGQE
RSRVSRCQVCSKLL
NT seq 5085 nt   +upstreamnt  +downstreamnt
atgaaattcctgatttgcgtggtcgtggtcgccttggcggtgagatctgcgcacgggggc
acagactttgacgagccgtgtgcggggcgggactgcagcagaggatgcaagtgcaaccca
gagaaaggcagcaggggtcgacctgggcctcttggcgacgtgggtcagagcggaccagag
gggccccgcggcaccctggggccggtggggcccaaaggagagaagggccaaatcggcctg
agggccccatctggtcccaaaggagacaaaggaccgatgggagttcctgggttccaggga
actgatggagttcctggtcaccccggtctggagggcggcagagggctacctggtccggac
ggttgtaacgggaccagaggagaacccggggaccccggctacgggacaggatcccctgga
tacactggacctgctgggcctcttgggataaagggccagaaaggagaacctcgatacttc
tcgaatggcggcagcgggagttatccaggacagccgggacccgacggtcgacctggaatc
cgaggtcccgatggtccgtctggttcacctggtcctcaaggacctgagggatactcgggt
cctcccggcccccccggccccccagggctgatggggagtcgcagtgacggatatcaagga
gagaagggagacaagggcgactcaggtctccccggacccagcggcacccccggcgacggg
tcactgagaagtgaacaaactctcactatctacaaaggagataagggggaaccaggattc
aagggcatccaaggattagctggaaaccctggtcaacctgggccgttcagttatcgaggt
gaagtcggagagaagggcattcctggataccccggggcgagaggcgctccaggtttcaac
ggcccccccggcgctctcggacaacagggatatggcggtaacccaggtttccccgggcaa
ccaggatacatcggacccaagggagacctgggagaccccggaccaccaggaccctccgtc
tacgtgaatgggccgagcaactatgttcaaggactaccaggtgacccaggacttaacggc
ctgcctggcgcccccggtgacgggggatctcctgggtatccaggaccaccagggccacca
ggatccgtgctggaccccacaggtcgtggtggcaccccaggattccccggcatcccgggc
cccaagggagagaagggtaacggcggtctaccaagctacggccaggaaggacgcccaggc
tcctccggtttgcccggagcccagggcccccgcggacctccaggccccacgagttcagca
aaaggtaccggatacgctggacagcccgggctgcccggctcccgaggacaacctggtggc
accggttacaatggcttaagaggagatcctggcgactgtaattgtagaggaggaggcact
acagggttaccagggttacgcggcccccccggagtcaatggcggccccggcttcggagga
cgaaagggagattctggtgaccccggctcacctggctttggtggcggtcagggacctcct
ggtcgacaaggtggaccaggtttctttggccgtaagggagagaagggggcgtcttattac
cgcggcccagattttggagtgaagggagaactcggaactccagggcccagaggacccaac
ggtgaaactggaaaacctggcagagacggactacctggcttcccaggaggccccgggcct
ccgggtgacggcggctacggcacagttggagagaaaggtttcccaggatacccgggggct
aagggtcgtcccggaggccctggctatcccggtagcggcagcggcggagcgccaggcact
cgcggagctgatggagatcccggaatacctgggtcaccagggtcaactggtgcacctgga
ccgccaggtgaaaacagctgtggaggggttaatgacgtcggagagggaacgggccaatcg
cggagctgcgacacagctgatgcgggagaccccggtttacccggtttacccggacgacca
ggcccgaaaggtcgaccaggttcctcaaaccaaccaggacgtcccgggtttgacggatcc
aaaggagacagaggagaacccggtactggaggtcaacctggatcaccaggtttccctgga
cccagaggtgattctggaggtccaggtaacccaggacaaggttttgacggaggccggggg
aaggatggccttcctgggcgtccaggagccaagggccagcctggagaggtactgggagcc
acgcctggtgttccggggcgtgacggttcaccgggacttcctggagacaagggtcaacct
gggacgccagcaggacctggatcacccggttttgacggacgctcaggcgttcctggacta
aagggagagcgcggcgttgacggtcttcctggttttcccggctcccctggacctccaggt
gagccgagaggtggcatccccggtcaaccgggacttcctggcagcaagggactgggcgga
tcaccaggctgccaaggttaccccgggcgcaagggagacataggagacccaggattccca
gggcctgctggcatgaagggaaccccaggacagcctggcacccctggttctccagggtcc
aggggaaccccaggacctccaggaccaggaactagagatggaattccaggaatcccagga
aggaagggtgagagaggtttcccagggctgatgggtttccctggactaccagggcgccct
ggtagtccaggcttcccaggaggcaaaggactgcccggagggcctggaagagatggactt
cctggtggacctggataccacggacagaaaggtgagcggggatacaccggccgctcaggc
ttgcccggcatacccagtcggttaggttatgtggagaaaggagaccccggaaaccctgga
agcagcgcacttcatggcttccccggacccagaggtgacaaaggtctgccaggtctgcct
ggtcgtcagggtctgcctggacttcctggttatgcggagcagagtaaaggacagccgggt
gagcctggctaccccggacgcgctggaggtccaggataccctggaccgaagggagaggct
ggaatcatgggattccccggcatgtccggagcaaggggtgatgatggtggaactggtttc
cctggtaaccccggagaacctggtcgacctggtgccaagggtatacccggggaaacttat
ggttatcctggaggtccaggttctaaaggtcagccaggagattcaggcttcccaggtggt
cgtgctaacgacggcgctcccggtgacaacggctttccaggaagtccaggttactctgga
gcaaagggagctcctggtgaaggaggacggcctggaataacgggctcccctggtttcccc
ggaccaaagggtcagtccttctacccaggacgaagaggacaagacgggggccctggtctg
ccgggaagtcctggaggacctggagccaaaggtttgtctggatcccctggtttggatgga
cttaacggcctcggaggacctaaaggcctccctggaactccgggtggaaacgcaggaggt
attccaggtaccccgggtattccagggctgaagggagagaggggcgtctcctacccggga
gctcccggctatcctggagggaagggagagagaggagacccaggtggttctggactccca
ggattccctggtcgacctggacttcctggtgagagtgtggggtccaatttccccggacct
acgggagatcctggactccctggactggatggagagtatggtttccagggtcctccaggt
ccacccgggccccctggtccaggcacagcacagggagacagaggtgaccctgggctgcca
ggcttccctggctcccccggcaggaaaggagaaactggaggccctgggggccccggaagc
cccggtttccctggtatcaaaggggaacgaggtgagagtggttacagcggaggtcctggt
ctaaaaggtttcaacggtgactctggttactatggaaacaaaggagccaagggattgcaa
gggcgtactggtcgtaagggttaccccggagcttcgctgccatggataccaaccgcgcaa
cccttgggagaattgggtttcccaggcgatggcggaacccctggttcccccggagagccc
ggtcagcctggagaatccggaccctcaggtgctaaaggtcctcctggccctgtgggtaaa
ctgggcaggaccggatctactggtccttctggaactgtcggtgacggcggaccacctggt
ttcccggggccaactggagaccaaggtcttcccggtaacaccggtcgccccggccttcct
ggcggagtcggtcgtggctccagcatcggctacacgctggtgaagcacagccaggacgcc
caggttcccatgtgtcctcagggcatggcccagctgtgggaaggctacagcctgctgtac
gtggaggggcaggaaaaggcccacaaccaggatctcggtcagccgggctcgtgtctcccc
aggttcagcaccatccccttcctctactgctcccccaacgaggtctgctactacgccagc
cgcaacgacaagtcctactggctctccacaactgcgcccatacccatgatgcccgtggcc
gaggagcagatccgaccttatatcagcaggtgttcggtttgtgaggcgccgtctcaggct
gtggccgtccacagtcaggacatgaacatccccagctgcccccccggctggaggagtctc
tggataggatactccttcctgatgcacacggcggcgggcgcggagggcggcggtcagtcc
ttggtgtctcccggctcctgcctggaggatttccgcgcaacgccgttcatcgagtgcaac
ggcgccaagggctcctgccactacttcgccaacaagtacagcttctggctcatcaccgtg
gatcccagccaggagttccgctactcgccggtgcaggagaccctgaagggaggccaggag
cgctccagagtcagccgctgccaagtctgcagcaagctcttgtag

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