Hippoglossus hippoglossus (Atlantic halibut): 117752032
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Entry
117752032 CDS
T07778
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03020
RNA polymerase
hhip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117752032 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
117752032 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117752032 (polr2a)
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117752032 (polr2a)
Enzymes [BR:
hhip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117752032 (polr2a)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117752032 (polr2a)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117752032 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
117752032
NCBI-ProteinID:
XP_034425033
LinkDB
All DBs
Position
18:complement(10514641..10526962)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRLSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIDRTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDNN
NPKIKDILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQHETEEDISKEKGHG
GCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEVFILGMDPKF
ARPEWMILTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAIIKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFRFDCTNERALRRMLQEDVVKDVLTNANVQSVLEREFDQMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINARTPTDLNPLRVVEGLQDLSKKLVI
VNGEDPLSRQAQKNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFNEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SAHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNMPGISVAGPTGMF
FGTVASPMSGMSPAMTPWNTGATPAYGAWSPGVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEETN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccactgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggttgtccgtcacagaaggggggatcaag
taccccgaaacaacagaaggaggacgtcctaaacttggcggccttatggacccaagacaa
ggtgtcatagacagaacgggaagatgtcagacatgtgcaggcaacatgacagagtgtcca
ggccactttggacacatagaactggcaaagccagttttccatgtcggcttcgtaacaaag
atcatgaaggttctccgatgtgtgtgtttcttttgctccaagctattagtggataataac
aacccaaagattaaagatatcctggtaaaatctaaagggcagccacgaaagcgcttgaca
cacgtgtacgagctgtgcaaaggaaaaaacatctgtgaaggaggggaggagatggacaac
aaatttggaatggagcaacacgagacagaggaggacatttctaaagagaagggtcacggt
ggctgtgggcgctaccagccacgcatcagacgctctggcctggagctgttcgctgagtgg
aaacacgttaatgaagattcacaggagaagaaaatcctgctgaatcctgagcgtgtccac
gagatcttcaagcgcatctctgatgaagaggtcttcatcttgggcatggatcccaagttc
gcccgtcctgaatggatgattctgactgtgctgcctgtgcctccactggctgtgaggcct
gcagtcgtcatgcagggatctgctcgcaaccaggacgacttgacccacaagctggctgat
attgttaagatcaacaaccaactgagaagaaacgagcagagcggtgcagcggctcacgtc
atagctgaggatgtgaagctgcttcagtttcacgtagccacaatggtggacaatgaattg
cccggcctgccgagggcaatgcaaaaatctggccgccctctcaaatcccttaagcaacgt
ttaaagggaaaggaggggcgagtccgaggtaacctaatgggcaagcgtgtggatttctcc
gctcgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtgggcgtaccgcgg
tccattgcagccaacatgaccttcccggaaattgtcacaccctttaacattgacagactt
caagagctggtgcgacgaggcaacagccagtacccaggagccaaatacatcattcgtgac
aacggagacagaattgacctgcgcttccatcccaaaccaagtgaccttcatctgcagatc
ggctacaaggtggaaaggcacatgtgtgatggtgacatcgtcatcttcaaccgacagcct
acactacataaaatgtccatgatggggcacagggttcggattctgccctggtccacgttt
cgactcaacctcagtgtcaccaccccatacaatgctgactttgacggggatgagatgaac
ctccacctacctcagtccctcgagacgagggcagagattcaggagctggccatggtgcca
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacacactc
acagccgtgcgcaaattcacaaagagagacgtcttcttagaaaggggggaagtcatgaac
ctcctcatgttcctctccacctgggacgggaaaatgccccaaccggccatcatcaagcca
cgtccactgtggacaggcaagcagatcttcagtctcatcattccaggacacatcaacgtc
atccgcacacacagcacccaccccgacgaggaggacagcggtccttacaaacacatctca
ccaggggacaccaaggtcatcgtggagaatggcgagttgatcatgggcatcctgtgtaag
aagtcgctcggaacctcagccggctcccttgtccacatctcctacctggagatgggccac
gacatcaccaggctcttctactccaacattcagactgtagtcaacaactggctgctcatc
gagggtcattccattggtatcggtgactccattgctgatgccaaaacctaccttgacatc
cagaataccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgacccctggtaacacgctgaggcagacctttgagaaccaggtcaat
cgtatcctcaacgacgctcgtgacaaaacgggatcctcagcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggccggttctaagggttcaaagattaacatctca
caggttatcgctgtggtggggcaacagaacgtggagggtaaaagaatccccttcggcttc
aaacaccgcacgctgcctcacttcattaaagatgactacggtcctgagagtagaggcttt
gtggagaactcctacctggctggcctgacaccaactgagttcttcttccacgccatggga
ggcagagagggtctgattgatacagctgtcaagactgctgagactggttacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtgaagtatgacggcacagtgcgtaactcc
atcaaccaggtggtccagctgcgttacggtgaagacggcctggcaggagagaatgtcgag
ttccaaaatctggcaactctcaaaccctcacacaaggcctttgaaaagaagttcagattt
gactgcactaatgagcgcgcactgaggcggatgctgcaggaggacgtggttaaagacgtc
ctgaccaacgccaatgtgcaaagtgtcttggagagagagtttgatcaaatgaaggaggac
cgggagatccttcgggccattttccccacaggggacagcaaggtggtgctgccatgcaac
ctggccagaatgatctggaatgctcagaagatcttccgcatcaacgctcggaccccaaca
gacctgaatcctctcagagtggtcgagggtcttcaagatcttagcaagaagctggtgatt
gtgaacggcgaggacccgctgagccgacaggcccagaagaacgccactctgctcttcaac
atccacctgcgctccacgctctgctccaaacgcatgacggaggagttccgcctttccacc
gaggctttcgactggctgctgggagagattgagaccaagttcaaccagtccattgcccac
ccaggtgaaatggtcggcgctctggctgctcagtcgctgggagaaccagctactcagatg
accctgaacactttccattacgccggtgtgtcagccaagaacgtaacacttggtgtgcct
cgtcttaaggagttgatcaacatctccaagaggcccaagacgccctcgctgacggtcttc
ctgctgggtcaggctgcacgtgacgctgagagggccaaagacatcctctgtcgactggag
cacaccacactccgaaaggtgacagccaacactgccatctactacgaccccaacccccag
aacaccgtggtggccgaggaccaggagtgggtgaacgtctactatgaaatgcccgacttt
gatgtgacgcgcatttcgccatggctgctccgtatcgagcttgaccgcaagcacatgact
gatcgcaaactaactatggaacagatcgcagagaagatcaatgcaggatttggagatgat
ctgaattgtatcttcaatgacgacaatgctgagaagctcgttctgcgaatcagaatcatg
aacagcgacgagaacaagttcaacgaggatgaggaggtggtggacaaaatggacgacgac
gtgttcttgagatgcatcgagtccaacatgctgacggacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcataatc
accgaggaaggtgagttcaaggccctgcaggagtggatcctggagacggacggagtgagt
ctcatgagagtcctgagcgagaaggacgtggatcccgtccgaaccacctccaacgacatt
gtggagatcttcacggtcctgggaattgaggctgtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggttcctacgtcaactaccgtcacttggctctgctctgt
gacaccatgacctgccgcggtcacttgatggccatcacacgtcacggcatcaaccgtcaa
gacacaggaccgcttatgaagtgttcctttgaagagacggtggatgtgttgatggaggca
tcagcacacggtgaatgtgaccccatgaagggggtgtcagagaacatcatgctgggccag
ctcgccccggccggtaccggctgctttgatttgctgttggatgctgagaagtgcaaatac
gggatggagattcccacaaacatgcctggtatcagcgtggctggacccactggaatgttc
tttggcacagtggcgagtcccatgagtggcatgtcacccgccatgacaccgtggaacact
ggggctacaccagcctacggcgcctggtctcctggtgttggaagcggcatgactcctggt
gcagccggtttctctcccagcgcagcatcagacgcaagtggcttctctcccggctactcc
cctgcctggtccccgactcctggctccccaggttctcccggacctgcaagcccgtacatc
ccatctccaggtggagccatgtcaccaaactactcgcccacctcaccggcctacgagcct
cggtcccctggtggctacaccccacagagcccaggctactccccaacatctccctcctac
tccccaacctctccctcttactcccccaccagccccaactacagcccgacctctccttcc
tactcccccacttcgcccagttactccccaacttctccctcctattcgcccacatctccc
tcctattcccccacctctccatcttactcccccacctccccgtcttactcccccacctcc
ccgtcctactctcccacctcgccaagctacagcccgacatcgccgagttacagcccgaca
tcacccagctactctcccacctccccctcttactcacccacttcaccttcatactctccc
acctccccctcttactctcccacctccccctcctactcccccacctctccctcctactcg
ccaaccagtccgagctacagccccacatcaccaaactacactcccacctctcccagttac
tcccccacctccccctcctactccccgacgtcgccctcttactctccaacctcccccaac
tacaccccgaccagccccaactactctcccacctctccctcgtactccccaacctctccc
tcatactctccttccagtccgcgctataccccgcagtcacccacctacacacccagctcg
ccctcatacagccccagctcgccctcctactcccccacctcccccaaatacaccccgact
tcaccctcatacagccccagctccccggagtacactcccacctctcccaagtactcccct
acctctccaaagtactccccaacatctccgaagtattcccctacctctcccacctactcc
ccaacaacgccgaaatacagccccacctctcctacctactctccgacctctccgacctac
acccccaccagccccaaatactcccctacctccccgacttactccccaacctcacccaag
tattcacccacgtctcctacgtactcgccaactagtcctaaaggctccacctacagcccc
acctcccctggatacagccccacctcacccacctacagcccggccatcagccccgacgac
agcgacgaggagaccaactga
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integrated database retrieval system
