Hippoglossus hippoglossus (Atlantic halibut): 117753037
Help
Entry
117753037 CDS
T07778
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117753037 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117753037 (msh2)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117753037 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Levi_coat
Motif
Other DBs
NCBI-GeneID:
117753037
NCBI-ProteinID:
XP_034426751
LinkDB
All DBs
Position
19:complement(9694528..9705110)
Genome browser
AA seq
932 aa
AA seq
DB search
MAVQPKHNLSMDSAAEHGFLSFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKLLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWKIEYKA
SPGNLTQFEEILFGGGTGAVGCAGVVAVRISTGADGQRVVGVGYVDAAQRTMGVCEFADN
EIFSNLESMLVQLGPKECLLAQGDGNGDGSKLRQVVERGGVLVSDRKRAEFSSKDMVQDL
NRLLRAKRGETTASSTLPELEKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYMR
LDNAAVNALNLFQASPDDTSRSHSLAGLLNKCRTPQGQRLVNQWIKQPLMDRTKIEERLD
LVESFVCDSELRHTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVTQIPALAAAI
ERYSGSYQVLLEAVFVSPLRDLHSDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDTLDKSMQTVLNSAARELGLDAGKTVKLESNAVLGFYLRVTCKVEKNLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIASGYVDPLQTLSDVIAQ
LDAVASFAVASVSAPVPYVRPRLLADGCRRMELLQARHPCMETDPDTAFIPNDITFVHGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVVDSVLARVGAGDCQVKG
VSTFMSEMLEIAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGGFCLFA
THFHELTALAAHEPTVHNLHVTALTSHDTLTMLYRVKPGVCDQSFGIHVAEMASFPPSVV
AMAKEKAEELEEFQEPAGGTSTQEEEPEAKRRLTDKQVGENLILNFLEKAKSLPATMSEA
EVKSELRRMKQELAAKNNTYITDILSRCVETV
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcacaacttgtccatggacagcgcggccgaacatggcttcctc
agcttcatcttctccatgccggagaaaccggacaccacgttcaggatattcgaccgcaac
gactactacaccgtgcacgggaaagacgccatattcgcggcgaaggaggttttcaagact
aacggggtcatcaagcttctgggctcagggagccgtaagctggagagcgttgtcctgagc
aagctgaacttcgaggccttcgtgaaagacctgctgctggtgcggcagtacagagtggag
gtgtacaggaaccacagcaagagcagcaaggagcacgactggaagattgagtacaaggcc
tctccgggaaacctgactcagttcgaggagattctgttcggtggtggaaccggagcggtg
ggctgcgcgggagtcgtagccgtgcgcatctccacaggagctgatggacagcgcgtggtc
ggtgtcggctatgtggacgccgcgcagaggaccatgggagtgtgcgagtttgcagacaac
gagatcttctccaacctggagtccatgctcgtccagctcggccccaaagagtgtctctta
gcccagggggacggcaacggtgacggcagcaaactacgacaggtggtggagcgtggtggc
gtgctggtctctgacaggaagagggcagagttcagtagtaaggacatggtccaggatctc
aacaggctgctgcgagccaagagaggagagacgacagccagcagcacgctgcccgagctg
gagaagcaggtggcgatgtcctgcctggctgcagtagtgcgtttcctcgaactgctctcc
gacgagtccaacttcaactccttcagtctgaccactctggacctgggtcagtacatgagg
ctggacaatgctgcagtgaacgctctcaacctcttccaggcttcacctgacgacaccagc
agaagtcactcgctggccggtctgttaaacaagtgccggacaccgcagggccagcgtctc
gtcaaccagtggatcaaacagcctcttatggaccgaaccaaaatagaggagaggttggac
ttggtggagagtttcgtgtgtgactctgagctcaggcacacctgccaggaggacttgctg
cggcgctttcccgatctccaccgtctggccaagaagttccaccgtcacactgctacactg
caggactgttaccgcgtctaccaggctgtgacccagatccccgcccttgccgcggccatc
gagagatactcaggcagctaccaggttctgttggaggccgtgttcgtctcccctctcaga
gacctgcactccgactttgtcaaatatcaggagatgatcgaaaccactctggacatgaac
cagatcgaccaccacgaattcctggtgaaggcgtcgttcgatccggtgttgagtgagctg
agagaaaagatggacacgcttgataagagcatgcagacagtgctgaacagtgcggcgaga
gaactaggtctagacgccggtaagacggtgaaattggagtcgaacgcggtgctgggcttt
tacctgagagtcacctgcaaggtggagaagaatctgaggaacaacaagaaattcaccaca
ctggacgtccagaagaacggagtgcgtttcaccaacagcaaactgagctctctgaatgag
gagtacaccaagagcagggaggagtacgaggaggcgcagaacgccatcgtcaaagagatc
atcagcatcgcctcaggttacgtggaccccctccagacgctgagtgacgtgatagcgcag
ctggatgcagtggcgagcttcgcggtggcgtccgtctccgctcctgtgccgtacgtgcgg
cctcgcctcttggctgacggctgcaggcgcatggagctgctgcaggccagacacccctgc
atggagacagacccggacacggccttcatacccaacgatatcaccttcgtccacggagag
aagaacttttatattataacaggaccgaacatgggaggcaagtcgacgtttatccgtcag
gtgggtgtgatcgccctcatggctcagatcggctgctttgtaccgtgcgagaaggcggag
ctgagcgtggtcgacagcgtcctggccagggtgggagcgggggactgccaggtgaaaggc
gtgtccaccttcatgtccgagatgttggaaatcgcagccattctccgctcggccactgag
aactctctgatcataatcgacgagcttggcagaggcacgtccacgtacgacggcttcggg
ctcgcctgggccatcagcgaacacattgcctccaaaatcggcggcttctgcctgtttgcc
acgcacttccacgagctgacggcgctcgcagcacatgagcccaccgttcacaacctgcac
gtcacggccctgacctctcatgacacgctcaccatgctgtacagagtcaaaccaggtgtg
tgcgaccagagtttcgggatccacgtcgccgagatggcctctttccctccatctgtggtt
gccatggcaaaggagaaggccgaggaactggaggagttccaggaacctgcgggtgggacg
tcgacgcaggaggaagagcccgaggccaagagacgactgacggacaaacaagtgggggaa
aacctgatcctgaacttcctggagaaggcgaagtcacttcctgccaccatgagcgaggcg
gaggtgaagtcggagctgaggagaatgaagcaggagctggcagctaagaacaacacgtac
atcacagacatcctttcccgatgcgttgaaaccgtttga
DBGET
integrated database retrieval system
