Hippoglossus hippoglossus (Atlantic halibut): 117753212
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Entry
117753212 CDS
T07778
Symbol
gspt1
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117753212 (gspt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117753212 (gspt1)
03012 Translation factors [BR:
hhip03012
]
117753212 (gspt1)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117753212 (gspt1)
Translation factors [BR:
hhip03012
]
Eukaryotic type
Release factors
117753212 (gspt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
PAM2
Motif
Other DBs
NCBI-GeneID:
117753212
NCBI-ProteinID:
XP_034427051
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All DBs
Position
19:16400154..16411518
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AA seq
602 aa
AA seq
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MDPRDTAPDSWELEDDAEAPAAAAAAELPGALAALNVNAKPFVPNVNAAVFVPSFPPSSG
AEMPVADGAPDPAASMEVAETAGTHPHFAPGSACSVPAPVENGGTEADMTTEEETWEQKE
EPGGGGGGGGSDDLGTGGECEEGASRKEDEEMIEEEEEEMPVPKMAPAPPDAPKKEHVNV
VFIGHVDAGKSTIGGQIMYLTGMVEKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG
KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKG
GQTREHAMLAKTAGVKHLIVLVNKMDDPTVHWSLERYEECKEKLVPFLKKVGFNPKKDIH
FMPCSGLTGSNLKDPVPECTWYTGLPFISHLDSLPNFTRSTDGAVRLPIVDKYKDMGTVI
LGKLESGTISKAQQLVMMPNRHTVEVLSLLSDDVETDDATPGENLKLRLKGIEEEEILPG
FILCSPDNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEIQITALICMVDKKSG
EKSKTRPRFVKQDQVCIARLRAAGVICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE
KD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggacccgagagacacagccccggattcgtgggagctggaggacgatgccgaggccccg
gctgctgccgcggcggcggagctcccgggcgccttggccgccctcaacgtcaacgccaag
ccgttcgtccccaacgtgaacgccgcggtgttcgtgccgagcttcccccctagcagcggc
gcggaaatgccagtcgcagacggtgcccctgatccagcggccagcatggaggtggcggag
acagccggtacgcatccacactttgctccaggctctgcgtgttcagttccagctccggtg
gagaatggaggcacggaggcagacatgaccacggaggaagagacgtgggagcagaaggag
gagccaggaggaggtggaggtggcggaggatcggacgacctggggacaggaggagagtgc
gaggaaggcgcctcgaggaaagaggacgaggagatgattgaggaggaagaggaggagatg
cccgtacccaaaatggctccggcaccgccagacgcccccaagaaagaacatgttaatgtg
gtctttattggtcacgtagatgccggcaaatcaactattggaggacagataatgtaccta
actggaatggtggagaagcgaaccctggaaaaatatgaaagagaagcgaaagagaagaac
agggagacatggtacctgtcgtgggctctggacacaaaccaggaggagagagacaaaggg
aagacggtggaggttggcagagcttattttgagacagagaaaaaacatttcaccatcctc
gatgcccccggacataaaagctttgtccccaacatgatcggtggagcgtcgcaagctgac
ctggcagtcctggtgatttctgcgaggaagggggagttcgagaccggctttgagaaaggt
ggacagacccgggaacatgccatgctggctaaaacggcaggagtcaagcatctcattgtc
ctggttaacaagatggatgaccccactgtccactggagcctggaaaggtatgaggagtgt
aaggagaagctggtgccatttctgaagaaggtgggcttcaaccccaagaaggacatccac
tttatgccttgttctggactcacaggttccaacctcaaggaccctgtacctgaatgcacc
tggtacacgggtttgccatttatttcccacctggacagtttgccaaacttcaccagatcc
actgatggagcagtcagactaccaatcgttgacaagtacaaggatatgggcacagtcatc
cttgggaagctggagtctggaaccatcagtaaagcccagcagctggtcatgatgccaaat
aggcatacagtggaggtactgagcctgctaagcgatgatgtggagacggacgatgcaact
ccaggggagaatctgaagttgaggctgaaaggcatcgaggaggaagaaatcctgcctggg
tttattctctgtagccccgacaacctctgccactccggtcgcacctttgatgcacagatc
gtcatcattgaacacaaatcaattatttgtcctggttacaatgcagtccttcacatccac
acctgcattgaagaaattcaaatcacagccttaatctgcatggtggacaagaaaagtgga
gagaaaagcaaaacacgaccacgcttcgtaaagcaggaccaggtctgtatcgccaggctc
cgggcagcaggggtcatctgcttagaaaccttcaaagacttccctcaaatgggacgattc
acgctgcgagatgaaggcaaaaccatcgccatcggcaaagtgctgaaactggtgccagaa
aaggactaa
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