Hippoglossus hippoglossus (Atlantic halibut): 117753242
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Entry
117753242 CDS
T07778
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhip03016
]
117753242 (trub1)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
117753242 (trub1)
Transfer RNA biogenesis [BR:
hhip03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
117753242 (trub1)
Prokaryotic type
117753242 (trub1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
GAIN_A
Pus10_C
Motif
Other DBs
NCBI-GeneID:
117753242
NCBI-ProteinID:
XP_034427108
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All DBs
Position
19:16989830..17000097
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AA seq
285 aa
AA seq
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MAGNMSSSFAPITSSLSKLQSLNGLFAIYKKQGPTSAELLNTFKEALLKEAGVQNPNPRK
RKKQSLKLGHGGTLDSAASGVLVVGVGYGTKKLSTMLAGSKKYVAVGELGKATDTLDATG
KVILEKDFEHITRQDFEEKLKSFTGDIMQVPPLYSALKKDGQRLSVLLKKGHKVEAKPAR
PVTVYNLTLQEFKPPFFTLDVECGGGFYVRSLVDDLGKALSSCAHVKNLVRTKQGQFTLE
EHALHEEQWTLEHVLHSLQPCTESEQGTKPSDQHNVNRTQANNMT
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaacatgagtagcagctttgcccctataactagttctctgtctaaattgcag
tctctgaatgggctctttgccatttataaaaaacaagggcctacgtctgcagaattgttg
aatacgttcaaagaggctctgctcaaagaagccggtgtacaaaacccaaatccgcgaaag
agaaagaagcagagcctgaagctggggcatggagggactctggacagtgctgccagtgga
gtgttagttgtcggtgttggatatggcacaaaaaagctcagtaccatgttagcgggttca
aagaaatatgttgctgtgggggagctgggaaaagcaacagacactcttgatgctactggt
aaagtgattttagagaaagactttgaacacattaccaggcaggactttgaggagaagctg
aaatccttcactggtgacatcatgcaagttcctccactctactctgctctgaaaaaggat
ggccagcgtctgtctgtcctgctgaaaaaaggtcacaaggttgaggccaaacctgctaga
ccagtcactgtgtacaacctgactctgcaggagttcaagcctcctttcttcactctagat
gttgaatgtggtgggggattttatgtcagaagcttggtggatgacctggggaaagctctg
tcatcctgtgctcatgtgaagaatctggtgcggaccaagcagggtcagttcaccctggag
gagcatgccttacacgaggagcagtggacactggagcatgtcctgcactctctgcaaccc
tgtacagagtcggagcagggtactaaaccatcagatcaacacaatgtgaacaggacccag
gctaataatatgacatga
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