Hippoglossus hippoglossus (Atlantic halibut): 117753708
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Entry
117753708 CDS
T07778
Symbol
spata13
Name
(RefSeq) spermatogenesis-associated protein 13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
117753708 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117753708 (spata13)
Membrane trafficking [BR:
hhip04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
117753708 (spata13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_1
SH3_9
SH3_2
PH
Motif
Other DBs
NCBI-GeneID:
117753708
NCBI-ProteinID:
XP_034427860
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Position
20:12208138..12223683
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AA seq
1272 aa
AA seq
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MSWAEQKDRGLSTSEDPLPCVHNSKADPLIRSRPLSDIYPFQSQGDRSAVPYLVSGCGAQ
VQPVTAGPLTEENKLNSINSSAWSNPVIGQPEGKPYPSRIMRLFSNSRKGPVPAHSPTTD
SPTSVDSNDSNGGPQSWSGLPGLGVVGSFKKLRSSVLQGIQSRGAANLDEEYLPSSNPEM
VNGTIVADTDPDLDNGTNHLKTAEGYSLSNGNITVHTLAMGQCSSDVEDYDDEENDEGDG
LTRNSRLSRSIKRAYGAGRISLFDLGRGRVAGSSANEAADQKPDQTCTVNVQTKSTNHNT
NVKVLNRMSKSADNLHIFKAPFRRKAPSLGPQFPQDEAQGTSMSNGKPYIQRTASASSVD
LRGHAVNYNKNPVKTKAPMLKLVGSMTDLTVRRRRSPSPSSTSAMSSLCRLHDDYSRRVP
CPQTSERQRRPSPVRARVMSVEHTPLVHHQPEDDINPQQHRVLISPVSVDPPDSAETSPG
SSGHCELQAIATREQLEDCDSSPLSHKETSTQDEEKSLQFKVTSEADEMSPTTSSSTPPI
SPTSLSESPTSSASSTDAAAMTTEMSSVKSRRRAGRSRPRPISDYGQLISRKHSIPEEVA
EMRAAERTENASLHKDCSDDDMCVNRESPENSNMNGDGQCRRYRPISVIGAGDLFPPDAE
EKEDRLPSPVSRPPIPSHQVPPYRAVSARFRPSALSQSTPIGLDRVGRRKLHRVLSDGAS
ECSATLDDSVSEEEEGGSFDELTDATPYLQPGVEISVLNEWISSGHTVYAEALWDHVTME
EQELAFKAGDVIRVLEASHKDWWWGRGADREAWFPSSFVRVRVNQEDSSADSVESVADQE
DPAPRDTHSAQHREQMRTNVVQEIMNTERIYIKHLKDICEGYIRQCRKHPEMFTELQLKT
IFSNIEDIYRFQRQFLKDLEKNYNKDQPHLSEIGSCFLLQEEGFSIYSEYCNTHPVACAE
LQRLMKLGRFKHFFEACRLLQQMIDISIAGFLLTPVQKICKYPLQLGELLKYTPKDHSDF
SGVSKAYDAMKNVASLINESKRRLESVDTIAHWQVAILHWEGPDVLERSSELIHSGELAR
AVRQGKMQQRSFFLFDHQLVFCKKDVLRRDLLHYRGRLDMDQTEVLDMPDGRDLDLGLTL
RNALRLRDASTLEFVCVLCCRKAQDKQRWLEAFAKERHRVKEDQEMGMEISEDQRKQAIV
NARRAKQGKIKPIGYSGSVPPHHPQNLHPLHQRHVTIPTSVPQQQVFSLAEPPKRKPYHL
LYSITRNAFFKK
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgagctgggcagaacaaaaggacagaggcttgtctacaagcgaagaccctctcccgtgc
gtccacaactcaaaagctgatccgttgatccgaagccgacccctcagtgacatctacccc
tttcagagtcaaggtgacaggagtgcagtcccatatctggtgtctggatgtggcgcacag
gtacagcccgtgaccgcgggtcctctcactgaggagaacaaattgaacagtatcaactcc
tctgcttggtccaaccctgtaataggtcaacctgaaggaaagccttacccctcaagaatc
atgaggctattttctaactcgaggaagggccctgtccctgctcacagtccaaccactgac
agtcccacctcagtcgacagcaacgacagcaatggtggcccccagtcctggtccggactt
ccaggactgggtgttgtgggctccttcaaaaagctccgctcctctgtgcttcagggtatt
cagagtagaggggcagcaaacctcgatgaggagtatttgccttcatcaaatccggaaatg
gttaatggcacaattgtagccgacactgaccctgatctagataatggaacaaatcattta
aaaacagcagagggatacagtttgtcgaatggaaatatcactgtgcatacgttggctatg
gggcagtgcagctcagatgttgaggactatgatgatgaggaaaacgatgaaggagatggt
ctcacacggaactcccgattatccaggagtatcaagagagcgtatggggcaggacgcatt
tcgttatttgacttggggagaggaagggttgctggaagcagcgcaaacgaagctgctgat
cagaaaccagatcagacatgcacggtcaacgtccaaacaaaaagcacgaaccacaacacg
aatgtgaaggtgttgaacagaatgagcaaaagcgcagacaaccttcacatatttaaggca
cctttcagacgcaaagccccatctctaggtcctcagtttcctcaggatgaggcgcagggg
accagcatgtcaaatgggaagccatacatccagagaacagccagcgcctcctcagtggac
ctgcgaggtcatgctgttaattacaataagaaccctgtgaagaccaaggcgccgatgctg
aagctggtgggcagcatgaccgacctgactgtccgacgcaggcgaagtccctcccccagc
tccacatctgccatgtcatccctctgccgtctccatgacgactactccagacgtgtgcct
tgcccacaaactagtgaacgacagcgccggccttcgccggtcagagcgcgagtcatgtct
gtcgaacacacaccactggttcatcaccagcctgaagacgacataaacccacagcagcac
cgggttctcatcagcccagtctctgtggatcctccagattcagcagagacttcacctggt
tcctctggtcactgtgagctgcaggctatagcaacaagggaacagttggaggattgtgat
tcatctccactcagtcacaaagagacttcaacacaagatgaggagaagtcactacaattc
aaggtgacatcagaagcagatgaaatgtctccgacaaccagcagcagcacacctcctatc
tccccgacaagcctctcggagtcacccacgtcttccgcgtcgtccacagatgcagccgcg
atgaccacagaaatgtcctctgtcaaatctaggcgaagggccgggcgttcgcgaccacgg
cctatttctgactacgggcaacttatttccaggaagcactctattcctgaggaagtggca
gagatgcgtgctgcggaaaggacagaaaatgcatcactgcataaagattgcagtgatgac
gacatgtgtgtgaacagagaaagccctgagaactcaaacatgaatggggacggtcagtgc
aggaggtatcggcccatctcggtgataggagccggggatctgttcccccctgatgctgag
gagaaggaagaccgccttccttctcctgtgtcacggccgcccatcccctcccaccaggtc
cccccctacagagcggtgtctgccaggtttcgcccttcagctctttcccagagcaccccc
atcggactggatcgcgttggacggcgaaagctccacagagtgctcagcgatggtgcgtct
gagtgctcggcgacgcttgatgacagcgtgagtgaggaggaggaggggggcagctttgat
gagctcactgatgccacgccctacctccagccaggggtggagatctccgtgctaaatgag
tggataagctcaggccacacggtgtatgcggaggctctctgggaccatgtgaccatggag
gagcaggagctggccttcaaggctggagatgttatccgcgtcctggaagcctcacacaag
gattggtggtggggcagaggcgctgacagggaagcctggttcccctccagctttgtgaga
gtgcgagttaaccaggaggactcgagtgcagacagtgtggagagtgtagcggaccaggag
gatccggcacccagggacacgcacagcgctcagcacagggagcagatgagaaccaatgtt
gttcaggaaatcatgaacactgaacgcatctacatcaagcacctgaaagacatctgtgag
ggttacatccgccagtgccgtaaacacccggaaatgttcactgagctgcagctgaagacc
atcttcagcaacatagaagacatctacagatttcagaggcagtttctcaaagacctggag
aagaactacaacaaagaccaaccacatctcagtgaaattggctcctgctttctcttgcag
gaggagggtttttctatatactcagagtactgtaacacccacccagtggcctgtgctgag
ctgcagcgcctcatgaagttgggtcgattcaaacatttctttgaggcctgtcggctcctc
cagcagatgatcgacatctccatcgccggtttcttgctcacgcccgtccagaagatctgt
aaatacccgctgcagctgggagaactgctcaagtacaccccaaaggaccacagtgacttc
agcggtgtgagcaaagcatatgacgctatgaagaatgtggccagtttgataaatgagagt
aaaagacgactggagagtgttgacaccatcgctcactggcaggttgccattctgcactgg
gagggacctgacgtgctggagcgcagttcagagctcatccactccggggagctggctcgt
gccgtccgacaaggcaaaatgcagcagcgcagcttcttcctgtttgaccaccagttggtc
ttctgcaaaaaagacgtcttgcgcagagacctgctccactaccgcggacggctggatatg
gaccagaccgaggtattggacatgcctgacggccgggacctagacctgggcctgacccta
cggaacgctctgcgcctgcgtgacgcctccactctggagtttgtgtgtgtgctgtgctgc
aggaaggcccaggacaagcagaggtggctggaggcttttgccaaggagagacacagagtc
aaggaagaccaagagatgggaatggaaatcagtgaggatcaaagaaaacaggccattgtt
aatgccagaagggccaaacagggaaagatcaaacccatcggttactctggttctgtgcca
ccccaccacccgcaaaacctccacccacttcaccagcgtcacgtcaccattccaaccagt
gtgcctcagcagcaggtcttctcattggccgagcccccgaaacgaaagccttaccacctg
ttgtacagcatcacccgcaacgcctttttcaagaagtga
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