Hippoglossus hippoglossus (Atlantic halibut): 117753747
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Entry
117753747 CDS
T07778
Symbol
lama1
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-1
KO
K05637
laminin, alpha 1/2
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117753747 (lama1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117753747 (lama1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117753747 (lama1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_EGF
Laminin_B
Laminin_N
Laminin_II
Laminin_G_3
Laminin_I
JAG1-like_EGF2
DUF948
Motif
Other DBs
NCBI-GeneID:
117753747
NCBI-ProteinID:
XP_034427935
LinkDB
All DBs
Position
20:20275180..20302021
Genome browser
AA seq
3080 aa
AA seq
DB search
MKILILLMLMEQTAAQQRGLFPAIFNLASNAVISSNATCGDPEPEVYCKLVEHVPGRIIK
NSHCPRCDANSVLSKERHPITNAIDGTNQWWQSPSIKNGQQFHWTTITLDLKQIFQVAYI
IIKAANSPRPGNWILERSLDGVTFEPWQFYAISDTECLTRYNIPPRRGSPTYKSDTEVIC
TSYYSRLNPLEHGEIHTSLINGRPSADDLTSVLLNFTSARYIRLRLQRIRTLNADLMTLS
ARDPREIDPIVTRRYYYSIKDVSXGGMCICYGHAMSCPLDPVTKRLQCVCEHNTCGESCN
QCCPGYHQDPWQPGTVSEGNKCERCNCHNKAVDCLFNQTVSDLFLSLNTRGVRHGGGVCI
NCQQNTAGINCEMCRDEYYRPAEVSPYSDFPCVQCNCDLRGSKSSVCSRDDSQSGVSAGQ
CVCHEGFAGRQCDRCAFGYRDFPRCVRCECDLSGSTNADPCSPCICKMNVMGAHCDLCKP
GFYNLNHNNPLGCTDCFCFGVSDVCESATWSTAQVFQTEAWLRPSQSLHTPPSLHGNELF
IPGNASSGHTHQQVLSWAAPAGFLGNKLVSYGGYLNYSVAYDVTMDNEDHSIPAHCDIII
EGNGQTLRLSPPLVLLLSPLAEHSVSVAMIPQKFVDDQTGFPVPRDDLLSVLYGVTSLTV
RVHLNNSANWPIRLRSVSLDVADSESVSGVQAVAVETCECPWGYSGTSCETCLTGFYRVG
GVLFGGNCMQCECNDHATECNSNGVCLGCTHNTTGPHCDQCLPGFYGDPAEGTANDCRLC
PCPLTEPSNSFSPTCMLESSGQVSCDQCQDGYTGSNCERCASGHYGNPQMVGGACVRCDC
NGNVDVSEMGHCDIITGECLRCLGNTTGRHCEVCQPGYYGDAVHAKDCRECGCVSGALSS
VCDVTTGQCKCREQVTGQTCDRCQSGFFGXPEGRGCRACNCSQSGSLSESCDEDGRCRCV
EGVGGDKCDRCRRGYYGFHGNGCTACTCDHTGGNCNPDNGECICPIHTEGDTCDRCETGH
WGHNLTTGCKPCSCSTAGSSAPQCDVMNGQCPCREGFSGRSCEQCAPGHHGYPVCSACGC
DMSGTEERVCNTTLGVCGTVDKLESVCARWACRGRRCEECVSGWFGLSTTNPDGCSKCFC
SGLSRVCDEKGGLIRTPITLDHSPALLSLVSQSNLQGVVSGVYQQGGGDMLLDTRHLNVS
RLTGPLYWRLPPQFEGTKLMSYGGLLSYIITFYAEDGMGLSNQEPQVLMRGGTLRKLVIY
TDMVAPSNGVTTQHDIRMTEHKWKYFNSVSEKAVSHSDFMSVLSNVQYVIIKASYGTRLQ
QSRISNMTMETAGEVESEEGSEVTGGVARLIESCICPPGYMGLSCQECAAGYFRQPQSEL
SSQSQKLMFVRPCVRCRCNNHSESCDTETGECHDCELHTSGRSCERCAPGYYGNTVNGSI
SDCSLCACPLRDNSFSPTCESDGAFGDFRCTACQTGYEGRYCERCSVGYYGNPSLQGGRC
SQCTCSRWGSVHSLCDAQTGQCECNPGVKGQSCDQCDERHILQGGECVSCDDECTGVLLT
DLDELHYHFLSVNVSGVTFAPYRQLVVLENQTRGMQVILSEKSSVSVHVSRVKDELSHVT
SDLRALLQQVTHLSHHMEEVDLSINNSLSQSALLLQSISSLQDSIQVLLREAEHLNQTTE
EELESANQTHLLEELEFMLENMRAVNLPAANAAAHQELSLSESLAHSLQVHFLSSRRQID
NRLLLLSNSLTDARETLQNAHMHLNNATQRNTETHNLLNNTHTLLHQYQSVHQHLTDECL
SVEGVMEENQLMLDDSISLINELTNTTTQVEVLAGQLDQWRPLLREQVDSLVVGLKMTDA
LENVYRAENHAHQLQSHAHSLHSSLLSVCNMSRNGTQLVQIESDITIIMRVESAQQVASV
AYVSASHALNMTAQSEQPLSKDVRANQNISSAVLQESRRINETVEDLQLKVSMVTSRLGL
IKDSVHNSSLLLRQPIRELQSLSNGSAVSLQQAQLQTAAAHSGLQVALQQLERLKDQLQD
SSSVVENTVKTVTETNQLVAHTDTAANDVQRKLEEAEHRTEHLMERIKPLSILGETLSRN
LSDIRELIDQARRQAASIKVAVQADRDCVRSYKPQIDSSNFNTLSLILKTTSKDNLLFYL
GGITTVDYLAVEMHDGKVSLLWDLGSGTNKLEFPGLDITNNRWTRINATRFGAQVSLSVH
QLDSEVSLLPTVTGRSVGSSRVLDIDKNTVIHIGGLGAHTQSPAALRSSTFQGCFGEALL
NERNIGLWNYDSREGACGGCFSSPQTEETSFHFDGSGFSLVQKSLRATSTSIVFQFKTLS
PGGLLLYLASNNTRDFLSIELVEGRVRLTFDLGSGVLILTSNRKYNTGVWYKITLQRNKR
KGYLSIMAADQSSEKEVLEAESPGIASDLNRSDLDPIYIGGLPASRPIRRQVVSRSYVGC
IKNVEIARSNFDLLRDAYGVRKGCVLEAVRSVSVLSGGFVQISPPSFSQEAELLFSFSSN
NQSGVLLAALSDDRLHKQYFLCAHLVLGTLEAELGEVGGATRKVKVMKPDGSFGDGEKHS
VIITINRKSLSVQVDEDHLKSVPLLPGGFPRLSPASFFIGGLPSAEDSHLPIRLQDLSRS
FRGCIQDLVVGGALVDLSGAVRYEGVELDSCLLQKRVGAVLPDDQDVEPTPDPTHVYVAT
PTYLSALTPGALTCVSEAEPSFLSSAAQFGSSRHSHMTFVINPNTVRKSVSVRLSVRSRA
ANGLIVLLSDSKHTDFIVVKLMGGRLMMSADLGKGPASVTSSVAINDGDWHAVSAEVSRR
SVSLSVDGLSLESVTVKGNQLDVDNTLYLGGLPHAYTSRRINVSSSLQGCIRSVSLNGAM
LDLTKPASQDDVTSCFTKDQTGSYFNGSGYAILMHDGYKVGSDVSVSLEFRTSQSEGVFL
GISSAKVDAIGLEMVNGQVVFNVNNGAGRVSVRSIGQGLCDGQWHRLLARKTKHSLSLNV
DGRSYTTPNPYPQSTSAETNNPVYVGGYPVGVRQNCLSSSSRFRGCLRNLQLIKSHLSNG
LDLSSAHFLLGVTPNSCPVV
NT seq
9243 nt
NT seq
+upstream
nt +downstream
nt
atgaagattttgattttgttgatgctgatggagcaaactgcagctcagcagagaggtctg
tttccagccatttttaacctggcgagtaacgcggtgatcagcagcaacgccacgtgtgga
gatccagaacctgaggtttactgtaaactggtcgaacacgttcccggaagaatcatcaag
aactcgcactgtcccaggtgtgacgccaactcagtcctctccaaagaacgtcatccgatc
actaacgccatcgatggaacaaatcagtggtggcagagtccgagcatcaaaaacggacaa
cagtttcactggaccaccatcacactggatctaaaacagatttttcaggtcgcttacatc
atcatcaaggcagctaactctcctcgcccaggtaactggatcctggagcgctctctggat
ggtgtgacctttgaaccctggcagttttatgccattagtgatactgagtgtttgactcgt
tacaacatcccaccgagacgcggatcaccgacgtacaagagcgacaccgaggtcatctgt
acgtcgtactactcccgactgaacccactggagcacggagagattcacacctccctgatt
aacggacgacccagtgcagatgatttgacgtctgttctcctgaacttcacgtcggctcgt
tacatccgactgagacttcagcgaatcagaactctgaacgccgacctgatgacgctgagc
gcacgagacccccgagagatcgaccccatcgtcacccggaggtattattactccatcaaa
gacgtctctngtggggggatgtgtatctgctacggacacgctatgagctgcccgctggac
cctgttaccaagaggctgcagtgtgtgtgtgaacacaacacctgtggagagagctgcaat
cagtgttgccctggttaccaccaggatccatggcaaccaggaactgtctctgagggaaac
aagtgtgaaaggtgtaactgtcacaacaaagctgtcgactgtctcttcaatcaaaccgtg
tccgacctcttcttgagtttaaatactcgtggcgttcgtcatggaggcggagtttgtatc
aactgtcaacaaaacacggccggcatcaactgtgagatgtgtcgagacgaatactaccga
cctgctgaggtttctccatattcagattttccgtgtgttcagtgtaactgtgacctcaga
ggatcaaagtcttcagtctgcagccgtgacgactcacagtcaggtgtgtctgcaggtcag
tgtgtgtgccacgagggtttcgcaggtcgacagtgtgaccgttgtgcgtttggatacaga
gatttccctcgatgtgttcgttgtgagtgtgacctttcaggaagcaccaacgccgacccc
tgcagcccctgcatctgcaagatgaacgtgatgggagctcactgcgacctctgtaaacca
ggtttctacaacctgaaccacaacaacccgctcggctgcaccgactgtttctgcttcggt
gtttctgacgtgtgtgagagcgccacctggtccacagctcaggtgtttcagactgaagct
tggctccgcccctctcagtccctccacacccccccttctttacatggcaacgaactcttt
atccctggcaacgcctcatctggccacacccaccaacaagtgctttcatgggcagcacct
gctggtttcctaggcaacaagctcgtgtcttacggaggttacctgaactactcggtggcc
tatgacgtgacaatggataatgaagaccactctatacccgcccactgtgacatcatcatt
gagggtaacggccagactcttcgtctctcaccccccctcgtcctcctcctctccccactg
gccgagcactccgtttccgtggcaatgatccctcagaagttcgtggacgatcagacaggt
tttccagttccccgcgacgacctgctgtccgtcctctacggtgtgacgtcactgacggtc
agagttcacctgaacaactctgccaactggccgattcgtctcaggtcagtgtctctggac
gttgctgactctgaatcagtctctggcgttcaagccgttgccgtggagacatgtgaatgt
ccgtggggctacagcggcacttcctgtgagacatgtctcacaggtttctacagagtgggc
ggagtcttgtttggagggaactgtatgcagtgcgagtgtaacgatcacgcgaccgagtgc
aactctaacggagtttgtttgggttgtactcacaacaccacaggtcctcactgtgatcag
tgtctccctggtttctatggcgaccccgcagaggggacagccaatgactgtcggctgtgt
ccgtgtcctctgacggaaccgtccaacagtttcagtcccacctgcatgttggagtcgtca
ggtcaggtgtcatgtgaccagtgtcaggacgggtacacagggtcaaactgtgagaggtgt
gccagtggtcactatggtaacccacagatggtgggcggggcctgtgttcgctgtgactgt
aacggtaacgtggacgtcagcgagatgggacactgtgacatcatcactggggagtgtctg
cgttgcctcggtaacacgactggtagacactgtgaggtctgtcagcctggttactatgga
gacgccgtgcacgccaaagactgtcgggagtgtggctgtgtcagtggcgccctctccagt
gtgtgtgatgtcacaacaggtcaatgtaaatgcagagaacaagtgactggacaaacctgt
gaccgttgccagtctgggttcttcggcntgccagaggggcggggctgcagggcttgtaac
tgcagccaatctggatctctctctgagtcatgtgacgaggacggccggtgtcggtgtgtg
gagggcgttggtggagacaaatgtgaccgctgtcgtcggggttactatggtttccacggc
aacggatgcactgcatgcacctgtgatcacactggtgggaactgtaaccctgacaacgga
gagtgcatctgccccattcacacagagggagacacctgtgacaggtgtgagacaggtcac
tggggtcacaacctcaccacaggctgcaagccatgcagttgcagcacagcaggaagctcc
gcccctcagtgtgatgtcatgaacggtcagtgtccgtgcagagaggggttctctggtagg
tcatgtgagcagtgtgcacctggtcaccatggttacccggtgtgctcggcatgtggctgt
gacatgtcgggaacagaagagagggtctgcaacacgacgctcggagtgtgcgggactgtc
gacaaactggagagtgtttgtgcaaggtgggcgtgtcgggggcggcgctgtgaggagtgc
gtctctggttggttcggtttgtcgaccacgaatccagacggctgctcgaagtgtttctgt
tcaggtctgagtcgagtctgtgacgagaagggaggactcatcagaacccccatcaccctg
gatcactctcccgctctcttgtcattggtcagtcagtctaacctgcagggtgtggtatct
ggagtttaccagcagggcggcggcgacatgctacttgacacccgtcatcttaacgtcagc
agactcactggccccctctactggagactgcccccccaattcgaaggcaccaagctgatg
tcgtacggcggactgttgtcttacatcatcaccttctatgctgaagacggtatgggactg
tccaatcaggagcctcaggttctgatgaggggcgggactctgaggaagcttgttatatac
actgacatggttgcccctagcaatggcgtcacgactcagcatgacatcaggatgacagag
cacaaatggaagtattttaactcggtttcagagaaggcggtgagtcactctgacttcatg
tccgtccttagtaacgtccaatacgtcatcatcaaagcttcatatgggaccagacttcag
cagagcaggatctctaacatgaccatggagacagcgggggaggtggagtcagaggaaggg
tcagaggtcacggggggtgtggccagactcattgagtcctgcatttgtccacctggatac
atgggactgtcctgtcaggagtgtgcagcaggttatttccgtcagcctcagtctgagttg
tcatctcagagtcagaagttgatgtttgttcgtccgtgtgttcgatgccgctgcaacaac
cacagtgagagctgtgacacggagactggagagtgtcacgactgcgagctacacaccagc
gggcgaagctgtgagcggtgtgccccagggtattatgggaatacagtcaatggctcaatc
agtgactgttcactttgtgcctgccccctacgggacaacagtttcagtccgacttgtgag
tcagatggagcgttcggggattttcgctgcaccgcctgtcagacgggatatgaggggaga
tactgtgagaggtgttcagttggttactacggtaacccctcattacaaggagggaggtgt
tcgcagtgcacgtgcagtaggtggggctccgtccactcattgtgcgacgcacagacagga
cagtgtgagtgtaatcctggggtcaaaggtcaatcgtgtgaccagtgtgacgagagacac
atcctgcagggaggagagtgtgtatcatgtgacgatgagtgcaccggcgttctgttgact
gacctggacgaactgcactaccacttcctgtctgtcaatgtgagcggtgttacctttgca
ccataccgccagctggtggtgctagagaaccagaccagaggcatgcaggtgattttatcg
gagaaaagttccgtcagtgttcacgtgtccagagtcaaagacgagttgagtcatgtgacc
tctgacctccgagcgttactacagcaggtcacacatctgtctcaccacatggaggaggtg
gacctgtctatcaacaacagcctctcccagagtgcactgctgctgcagagtatcagcagc
cttcaagacagtattcaggtgctactgagggaggcggagcatctgaaccagaccacagag
gaggagcttgaatcagccaatcagacacatctgttggaggagttagaattcatgctggaa
aacatgagagccgtcaatctaccggccgccaacgccgcagctcatcaggagctcagccta
tcagagtctctcgctcactcgctgcaggtgcacttcctgtccagcaggaggcagattgac
aacaggcttctcctcctctccaactccctcactgacgccagggaaacgctgcaaaacgca
cacatgcacttaaacaatgctacacaacgaaacacagagacacacaatctgctgaacaac
acacacactctgctgcaccaataccagtctgtccatcagcatctgacagacgagtgtctc
tctgtcgagggagtgatggaggagaatcagctgatgttggacgacagcatcagtttgata
aacgagttaacaaacacaaccacacaggtggaggtgttggccggtcagctggatcagtgg
cgccccctgttgagggaacaggtggacagtttggtagttggacttaagatgacagatgct
ctggagaatgtttaccgtgcagagaaccacgcccaccaactacagagccacgcccactcc
ctgcacagctctctgttgtcagtgtgtaacatgtcccggaatggaacccaattggtccag
attgagagtgacatcacgatcatcatgcgagttgagtccgcccagcaggtggcatcggtt
gcttatgtctccgcctcccacgctctcaatatgaccgcccaatcagagcagccgctgtcc
aaggacgtcagagccaatcagaacatcagctccgctgttttacaagaaagtcgacgaata
aatgagacagttgaagacctacagctgaaggtctccatggtaaccagcagactgggactt
atcaaagacagtgtccataactcaagcctcctactccgtcagccaatcagagagctgcag
agtctctctaacggttcagctgtgtcactgcagcaggctcagcttcagactgcagcagca
cactctggtctgcaggtggcgctgcagcagctggagagactcaaagatcagctgcaggat
tcttcttctgtggtggaaaacacagtcaaaacagtgacagagaccaaccagctggtggcg
cacacagacactgctgccaatgatgtgcagcgtaagcttgaggaggcagagcatcgtacg
gagcatctgatggagcgcataaagcccctgagcattctgggagaaacactgagccggaat
ctgtccgacatcagagagctgatcgatcaggctcgtcgacaggctgcatcgataaaggtg
gcggtgcaggcggacagagactgtgttcgatcctacaaacctcagattgactccagtaac
ttcaacactctgagtctgatcctgaagacgacgagtaaagacaacctgctcttctacctg
ggcggcatcaccacggtggactacctcgctgtagagatgcatgatgggaaggtttctctg
ttgtgggatttggggtcaggaactaacaaactggagtttcctggactcgacataaccaac
aacaggtggaccagaatcaacgctacacggttcggggcgcaggtttctctgtcggtccat
cagctggattcggaggtgtctctgttgcccacggtaacaggtcgatcagtgggatcgtcc
cgagttttagacatcgacaaaaacacagtgattcacatcggaggcctgggcgctcacact
cagagccccgcagcgctgaggtcatcgacctttcagggctgttttggcgaagctttgctc
aacgagaggaatatcggactgtggaactacgacagcagagaaggagcatgtggaggctgc
ttcagcagtcctcagacggaggagacgtccttccactttgatggatctggattctcattg
gtccagaaatctctgcgtgcgacgtcgacgtcgatcgtgtttcagtttaaaactctgtcg
ccgggcggattactgctctacctggcttctaacaacacgagagacttcctgtccattgag
ctggtggaggggcgtgtccgtctaacctttgacctcggttcaggcgttctgatcctgacg
tccaacaggaagtacaacacaggagtgtggtacaagatcacgctgcagaggaacaaacgc
aaaggatacctgtcaatcatggctgccgaccaatcatcagagaaggaagtgttggaggcg
gagtctccagggattgcctccgaccttaaccgctctgacctcgaccctatctacatcgga
ggacttcctgcctccagaccaatcaggcgacaggtggtgtccaggtcgtacgtcggctgt
ataaagaacgtggagatcgctcgctccaacttcgacctgctgagagacgcatacggcgtc
aggaagggctgcgtactcgaggcggtgcggagtgtgtcggttctgtccggaggcttcgtt
cagatctctcctccatcctttagtcaagaggcggagcttctcttctccttctcttccaac
aaccaatcaggagtcctgctggctgcccttagtgacgatcgcttgcacaaacagtacttc
ctgtgtgctcacctggtcttaggcaccttggaggcggagcttggtgaagtgggcggggcc
acccggaaggtgaaagtgatgaaaccggacggatcatttggtgacggagaaaaacactct
gtgattatcaccatcaacaggaagtctctgtccgtgcaggtggacgaagatcacctgaaa
tcagtccctctgttgccaggcggatttcctcgtctgtctcctgcctccttcttcattggt
gggctgccctcagcagaggattcccatctaccaatcagattacaagatttatccaggtcg
ttcagaggctgcatccaagacctggtggtgggcggagcacttgtcgacctatcaggagct
gtgaggtatgagggggtggagcttgacagctgtctgttgcagaagagggttggggcggtg
cttcctgatgaccaggatgtagaaccaactccagaccccacccacgtatatgtagccacg
cccacatatctgagtgccctgacacctggagcgctcacgtgtgtgtcggaggctgagccg
agtttcctgtcatcagccgctcagtttggttcgtccagacacagtcacatgaccttcgtc
atcaaccccaacaccgtgaggaagagcgtctctgtgaggttgtcggtgcgaagccgggct
gccaacggtttgatcgttctactctcggactccaaacacacagacttcatcgttgtcaaa
ctgatgggagggagactgatgatgtcagctgacctgggaaaaggccccgcctctgtcacc
tcgtctgttgccattaacgacggagactggcacgctgtgagcgctgaggtcagccggcgc
tcagtgtcgctgtcagtcgatggtttgagtctggagtctgtgacagttaaaggaaaccag
ctggacgtggacaacacgctgtacctgggaggactaccacacgcatacaccagcaggagg
atcaacgtcagcagcagtttacaagggtgcattcgctcagtcagtctgaatggagccatg
ttggatctgaccaaaccagcctcacaggatgatgtcacttcctgtttcactaaagaccag
acaggaagttactttaatggcagcggctacgccatcctcatgcatgatgggtataaagtt
ggctcggacgtgtcagtatctctggagtttcgaacgagccaatcagaaggagtatttctg
ggaatcagcagtgcgaaggtcgacgccattggactggagatggtgaacggacaggtggtg
tttaatgtaaataacggggcgggacgagtgtctgtgcgttcgattggtcaggggttgtgt
gatggacagtggcaccgcctactggccagaaaaaccaaacacagcctgagtctgaatgta
gatgggcggagttacaccacccctaacccctacccacaatccacctcagcagagaccaac
aaccccgtctacgtgggagggtatccagtgggagtgagacagaactgcctgtcgagcagc
tccaggtttagaggttgtctcaggaacctccagctcatcaagtctcacctgagcaacggt
ctcgacctgagctccgcccacttcctgttgggtgtcacacctaactcgtgtcctgttgtc
tag
DBGET
integrated database retrieval system
