Hippoglossus hippoglossus (Atlantic halibut): 117754134
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Entry
117754134 CDS
T07778
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04140
Autophagy - animal
hhip04148
Efferocytosis
hhip05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117754134 (vps41)
04148 Efferocytosis
117754134 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117754134 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117754134 (vps41)
Membrane trafficking [BR:
hhip04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
117754134 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
zf_RING_Vps8_fungal
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_Prp19
Vps39_1
TPR_7
Beta-prop_HPS5
Beta-prop_EML_2
WD40_WDHD1_1st
TPR_19
zf_RING_Vps8
TPR_GEMI5
TPR_17
zf-Vps39_C
TPR_PEP5_VPS11
Beta-prop_THOC3
MIB_arm
Frtz
Helicase_PWI
Motif
Other DBs
NCBI-GeneID:
117754134
NCBI-ProteinID:
XP_034428750
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All DBs
Position
20:complement(15099618..15114707)
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AA seq
853 aa
AA seq
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MAEVEEGGKPSEEFTDESEEEDSEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALG
THFGKVFLLDIQGNVTQKFEISSVKINQISLDESGEHVGICSEDGKVQVFGLYTREGFHE
NFDCPIKVVAVHPQFTRSNYKQFVTGGNKLLLYERNWLNRWKTSLLHEGEGPITNIQWRA
NLIAWANNVGVKIYDIGTKQRITNVLRDNVSLRPDMYPCSLCWKDNATLIVGWGTSIKIC
VVKERNPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLFFVKENSDQMDEEFRAR
PRLDIIQPLPESCEEISSDALTVRNFQDNECRDYRLEHSEGESLFYIISPKDIVVAKERD
QDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMSYINHLVEKGDYDTAARKCQKV
LGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLRTDYEGFATLIR
EWPGELYNNMAIVQAVTDHLKRDPTNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVYQ
LIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKISTDRVVEELADRPELLHVYLHKS
FKRDHHKGQRYHERQIGLYAEYDRPNLLPFLRDSTHCPLEKALEICQERNFVEETVFLLS
RMGNCRRALQMIMEELEDVDKAIDFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQIMLREGCKKILVADSLSLLQKMHRTQMR
GVRVDEENICESCHATILPSDMAKPFNVVVFHCRHMFHKECLPTPGTIHGVQFCNICSAK
KRGPGSGILEMKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtggaggagggcggaaaaccaagtgaggagttcacagatgagtctgaggag
gaggacagcgaggaggagcccaagctgaagtatgagaggctctccaatggggtgaccgaa
atcctccaaaaggatgcagccagctgtatgaccgtccacgacaagtttcttgccctcggt
acacattttggaaaggtcttcctgctggacatccaaggaaatgtcactcagaagtttgaa
attagttcagtgaagatcaaccagatcagtctggatgaaagtggagagcatgtgggcatc
tgctccgaggacgggaaggttcaagtgttcggcctctatacaagagagggcttccacgag
aacttcgactgtcccatcaaagtggtagctgtacaccctcagttcaccagatcgaactat
aaacagtttgtcactggaggcaacaagcttcttctctatgaaagaaactggttgaatcgc
tggaagacgtcgctcctgcatgaaggggaaggacccatcactaacatccagtggagagcc
aacctcattgcctgggcaaacaacgtgggagttaaaatctatgacatcggcacgaaacag
cgcatcaccaacgtgctgcgggataacgtgagtctgaggcctgatatgtacccgtgcagc
ctgtgttggaaggacaacgccactcttattgttggctgggggacgtccatcaagatttgt
gtcgtgaaagagcgaaatcccactgagatgagagatctgcccagccgctatgtggaaata
gtgtctgcattcgaaaccgagtttttcatcagtggcctggcacctctggcagatcagctg
gtcaccctgttctttgtgaaggagaactcggatcagatggatgaggagttccgtgcccgg
cctcgtctcgacatcatccagcctctccctgagagctgtgaggagatctcctcagacgcg
ctgacagtgcgcaacttccaagacaacgagtgcagagactatcgcctcgagcattcagag
ggagagtcgctcttctacatcattagtcccaaagatatcgttgtggccaaagagcgagac
caggacgaccatatcgattggctgcttgaaaagaagaaatatgaggaggcactgatggct
gcggagatcagcttcaagaacattaagagacacgacgttcagaaaatcgggatgtcttac
ataaaccatttagttgagaaaggagactacgacactgctgcgagaaagtgtcaaaaggtt
cttgggaaaaacatggaattgtgggaaaatgaagtttataggttcaaaaccatcggacaa
ctgaaggccatcagtcagtatctacccagaggagatctgcgtctcagaccagccatctat
gagatgatcctgcacgaattcctcagaactgattatgagggttttgcgacactgatccgg
gaatggcccggagagctttacaacaacatggccatcgttcaggccgtcacagatcacctg
aagagggatcccaccaacagcaccttgctcaccacactggctgaactgtacacgtacgac
cagcggtacgacagagccttagaaatctacctgagactgaggcacaaagacgtttaccag
ctgatccacaaacacaacctgttctcatccatagaagacaagatcgtacttctcatggac
tttgataaagagaaagccgttgacatgctccttgacaatgaagacaagatatcaacagac
agggtggtcgaagaacttgcagacaggcccgagcttctgcatgtgtatctccataaatca
ttcaagcgcgaccaccacaaaggccaaaggtaccacgagcggcagattggcctgtacgca
gagtacgaccgaccaaacctcttacctttcctgagagacagcacccactgccctcttgaa
aaggctcttgagatttgtcaggagaggaactttgtagaagagaccgtcttcctgctcagc
aggatggggaactgcagacgcgctctgcagatgatcatggaggagctggaggatgttgac
aaagccatagatttcgctaaagagcaggacgatgcagagctgtgggaggatctcatctct
tactctattgacaaaccacctttcatcactggcctccttaataacatcggtactcatgtg
gatcccatcctactcatccatcgcataaaggagggcatggagatccctaacctcagagat
tcactagtgaaaatccttcaggactacaatcttcagattatgctgagagaaggttgtaag
aagatccttgtggccgactcgctctcgctgctgcagaagatgcacagaacgcagatgaga
ggagtcagggtcgatgaggagaacatttgtgaatcatgtcacgctactatattaccatcc
gacatggccaaacccttcaacgtggtggtgtttcactgcagacacatgtttcacaaagaa
tgtttaccaacaccaggaacaattcatggcgtccagttttgtaacatctgcagtgcgaag
aagcgggggccaggaagtggaatacttgagatgaaaaagtaa
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