Hippoglossus hippoglossus (Atlantic halibut): 117754544
Help
Entry
117754544 CDS
T07778
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hhip03000
]
117754544 (sox1a)
Transcription factors [BR:
hhip03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117754544 (sox1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117754544
NCBI-ProteinID:
XP_034429344
LinkDB
All DBs
Position
21:complement(17749179..17762817)
Genome browser
AA seq
299 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTTTGQTGPNSGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPGGGGGVGLGVGMGSSGIGQRLESPGGHGGSGSSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGGHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNSQ
SYMNASPSGYGGITYTQHQGSGVSSSTAMGTLGSLVKSEPSQSDDQWTWITAGGTVIYR
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaactgacctccattcccccggcccccaaacgaacactacc
acggggcaaacggggccgaatagcgggtccaaagcgaaccaggaacgggtgaagagaccg
atgaacgctttcatggtgtggtcccgtgggcagcggaggaagatggcacaggagaacccc
aagatgcacaactctgagatcagcaagcggctgggtgccgagtggaaggtaatgtccgag
gctgagaagcgtcctttcatcgacgaggcgaaacgtttgcgagccatgcacatgaaggag
catccggattacaagtaccggccaagacggaagaccaagacgctgctgaaaaaggacaaa
tattccctcgcaggaggactgctttctgggcccggtgggggtggtggagttggtttaggg
gtcggcatgggttcatcggggatcggacagaggttagagagccccgggggtcacggaggc
tcaggcagctccggctacgcgcacatgaacggctgggcgaacggtgcgtactcggggcag
gtggctgcagcggcagcagccgcagcgatgatgcaggaggctcagcttgcctacagccag
cacccggggagcggagggcaccaccaccaccactcgcaccaccaccactcacacaacccg
cagcccatgcaccgctacgacatgacagcgctgcagtacagccccatctcgaactctcag
agctacatgaacgcttcaccctccggctacggcgggatcacctacacacagcaccagggc
tccggcgtctcctcctccactgccatggggacgttagggtcgctggtgaaatcggagccg
agtcaaagtgatgaccagtggacatggatcactgcgggtgggactgtgatttacagatag
DBGET
integrated database retrieval system
