Hippoglossus hippoglossus (Atlantic halibut): 117754631
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Entry
117754631 CDS
T07778
Symbol
col18a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhip04147
]
117754631 (col18a1a)
00535 Proteoglycans [BR:
hhip00535
]
117754631 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117754631 (col18a1a)
Exosome [BR:
hhip04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117754631 (col18a1a)
Proteoglycans [BR:
hhip00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117754631 (col18a1a)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117754631 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
117754631
NCBI-ProteinID:
XP_034429541
LinkDB
All DBs
Position
21:complement(4444854..4478672)
Genome browser
AA seq
1434 aa
AA seq
DB search
MRTQAGVLFLLAHWVVCSDAWFWSWTGTTTLAPTMDEGSGSPAGSGEQPTEARGGTQIID
EAHGIQVTGQPWVDTTDSAALTTLIPTTPLENEQSTEKGPMGISSPVLKPEDTGVSLMQL
IGDPPPEEITRVFGPDNSSRYVFGPEANTGQLARAHLPSPFHRDFSLIFNLKPTSDKGGV
VFSVTDASQKIMYVGVKLSPVQGRDQTISLYYTEPGSQRSYEAALFPVPSMRNIWTRFAI
AVRDDKVMLYHNCATEPLVKRIERSPDDMELDTGAGVFVGQAGGADPDKFLGEIEELRLV
GDPRAAERYCDEDEGGDDSDMASGDGSGDEAPRPTRPAVENRRWTTAPPSSGPIPMPPLS
RKEETSVARETGAAGTKGERGDRGDRGEKGDRGPIGSKGESGSGSSSRGGARGEKGEPGE
KGLKGSAGFGYQGKKGDSGPAGPPGPPGPPGTPTEVSVSSDGSVLSAAPGPRGPAGPQGV
AGPGGPPGADGEPGDPGEDGKTGADGPPGFPGTPGDTGTKGEKGGRGEGQPGPRGVPGLP
GPPGSGVRSTFVDMEGSGFPDLESIRGLPGPPGVPGPPGAPGPATAGTALSSGAFGPPGK
DGVPGQPGLSGLPGTDGLPGALGPKGEKGDSAELGLPGVAGEKGDQGSPGLPGRAGESGL
AGLPGPIGPVGQPGPPGPPGPSYRVGFDDMEGSGGGFSNGLPGVRGPEGRQGSPGFPGIP
GKPGLPGMPGQKGSEGAAGREGRSGLDGFQGPQGPKGDAGDKGDRGETGRDGTGLQGPPG
PPGPPGQIVYSTSGNVSDGGQTQXRGGPGLPGHAGFPGPMGPKGDIGDPGPPGFGVKGEK
GEPGLVIGPDGNLLYLDGLSGLKGDRGPSGPVGPPGQYGPPGIKGEIGMPGRPGRPGVNG
YKGEKGDVTVGTGYSYPGVSGPPGPPGPPGPPGPPTPLDRFNRYDDTSRNYQVKGEKGER
GDRGVQGIPGTASNFDIYTFKNEMKGQSGDPGVKGEKGEPAGGGYYDQRFGSVPGQPGSP
GKPGLPGPKGDSIIGPSGPQGPQGSPGIGYDGRQGHPGPPGPPGPTSSQPGPYRPNHSVS
VPGPPGPPGPPGNPGSSSGITVLRSYDTMISSARRQAEGSLIYIIDKSDLYLRVRDGLRQ
VMLGDYRPFFRDLENEVAEVQPPPVIHYPQSQDRSHNNGAGHYSQGGSAIRPIEPPPQPA
VEPVYPPHYDPRFPDPRQTGQTDGRLAQNTGNRYPVTPQRRPSPALPQPGGHVDGSGTGL
HIIALNAPHTGNMRGIRGADFLCFQQARAVGLKGTYRAFLSSKLQDLHTIVRRSDRESLP
IMNLKDQVLFSSWESIFGDNASKMRDNVPIYSFDGRDIIRDSAWPEKMVWHGSSNKGHRQ
TDHYCETWRAGDHAVTGLASSLQSGHLLQQTSSSCSGSYIVLCIENAFVSPSKK
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgaggacccaggctggagttttgtttttgttggcccactgggtggtctgctctgatgct
tggttctggtcctggactggtaccacaactctggccccaacaatggatgagggctctggc
agtccggcaggtagtggagaacaaccaacagaggcccggggtggaacacagatcattgat
gaggcacatggaatccaagtgactgggcagccgtgggttgacaccactgactctgcagca
ctgaccactttaatacctactacaccactggagaatgagcagtcaacagaaaagggccca
atggggatttcgtcacccgtactcaaacctgaagacactggagtctccctgatgcagctg
atcggggatcctcctcccgaagagatcacccgagtctttgggcccgacaacagctccaga
tatgtctttggccccgaagccaacaccggccagctggcacgcgcccacctgccgagcccg
ttccacagagacttctccctcatcttcaacctgaagcccacctctgacaaggggggggtc
gtcttctccgtcacagatgcctcgcagaagatcatgtacgtgggtgttaaactgtcgccc
gtacagggcagagaccagaccatcagcctgtactacacagaacctggctcgcagcggtcg
tatgaagcagccttgttccccgtgccctccatgaggaacatctggacccggttcgctatc
gctgtgagggacgacaaggtgatgctgtaccacaactgtgccacggagcctttggtgaag
cgcattgagaggtccccggacgacatggagctggacaccggtgctggggtgttcgtcggg
caagctgggggggcggatcccgacaagttcctgggggagatcgaggagctgaggctggtg
ggagacccccgagctgctgagagatactgtgacgaggacgagggcggggacgactccgac
atggcttcaggtgacggaagtggcgacgaggcaccgagacccaccagaccggctgtggag
aatcgcagatggacgaccgctcccccgtcctctgggcccattccgatgccgccgctcagc
aggaaagaggagacgtctgttgcaagagagacgggagcagctgggactaaaggagagaga
ggtgaccgcggggacagaggagagaaaggagacaggggaccaatcggctcgaagggagaa
tcaggctccggctccagctctcgggggggagcccgtggagagaagggagaacctggagaa
aagggattgaagggcagcgcaggatttggctaccaaggaaagaagggggattccggcccc
gctgggccccccggcccccccggccctccaggaactccaactgaggtttcagttagcagt
gatggctcagttctttcggcagcgcctggaccccgaggaccagccggaccacaaggtgtc
gcaggccccgggggaccaccaggagctgatggagagcctggtgatcctggtgaggatgga
aaaactggtgctgatggacctccgggcttcccaggaaccccaggtgacactggaaccaaa
ggagagaagggaggccgtggagagggtcaaccgggccctaggggggtcccaggacttccc
gggccccctggatcaggagtcagatctacctttgtggacatggagggttcaggtttcccc
gacctggaatccattcggggactacctggcccaccaggtgtccctggtccccccggggct
cctggtcctgccacagccggcacagccttgagttctggagcctttggtccaccaggaaag
gatggcgtgcctggtcaacctggtttgtctggcttaccgggtactgacggcctcccagga
gctcttggtcccaagggagaaaagggtgattcagccgagctgggtcttccaggagtcgct
ggagagaagggagatcagggaagccctggtttaccgggacgtgcaggagagtccggactc
gctggtttacctggacccatcggaccggtggggcaacccgggccccccggacctcctgga
ccaagttatcgtgttggatttgatgacatggaaggctcaggaggaggtttcagcaatgga
cttcctggtgtcagaggacctgaaggaagacagggttctcctggtttccctggtattcct
ggtaaacctgggttgcctgggatgccgggtcagaagggcagtgaaggtgctgcaggacga
gaggggcgatctgggctggacggcttccagggacctcaggggccaaagggagacgccggt
gacaaaggcgacaggggagaaacgggtcgagatggaaccggactccagggtccaccaggc
ccacctggaccaccaggacaaatcgtctactctacatctggaaacgtaagtgacggagga
caaacacagtgacgtggtggacctggtttacctggtcacgctggattccctggtcctatg
ggaccaaagggggacataggtgacccaggacctcctggctttggggtgaagggagagaaa
ggtgagcccggcttggtgatcggacctgatggaaatctcctgtatctggacgggttgagt
ggcctgaagggagacagaggaccttctggtcccgttggacctcctggccagtacgggcct
cctggaataaagggtgaaattggaatgcctggaagacctggtcgccctggtgtaaatgga
tacaagggagagaaaggagacgtgacagttggtaccggctatagttaccctggagtctct
ggacctccaggaccgcccggaccacctggacccccagggccacccactcctctggaccgc
ttcaaccgatatgatgacacttcaaggaattaccaagttaaaggggaaaaaggagaacgt
ggtgaccgaggagttcaaggaatcccaggaacagcgtctaattttgatatctacacattc
aagaatgaaatgaagggacagtctggagatccaggtgtgaagggagaaaagggagagcct
gctggtggtggttactatgaccaacgttttggaagcgtgccgggccaaccggggtctcct
ggcaaaccaggcctaccgggtcccaaaggagattccataataggcccctctgggccccag
ggaccacaggggtcaccaggcattggttacgatggacgtcaaggtcatccgggaccacct
ggacctccagggcctacaagctcgcagcctggaccatataggcccaatcactccgtcagt
gtccctggacctcctggtcctcctggcccacctggaaatcctggttcctcctctggtatc
acagttttgaggtcgtatgacacaatgatttcttcagccagacgtcaggcagagggcagc
ctcatctacatcatcgacaaatcagacctgtatctaagagttcgagatggactgcgccaa
gtcatgctcggagactaccgaccattcttcagagatctggagaacgaggtggcagaggtc
cagcctccgcctgtaatccactaccctcagtcccaggaccggtcccacaacaacggagct
ggccattactcccagggcggctctgccattcgtcccattgagcctccacctcaaccagcc
gtcgaacccgtgtaccccccacactacgatcccaggttcccagaccccagacaaacgggt
cagacagatggaaggttagcccagaacactggcaacagatacccagtcactccacagaga
cgacccagcccggctcttccacagcctgggggccatgtggacggatctggaacaggacta
cacatcatcgccttgaacgcccctcatactggtaacatgcgagggatccgcggggcagac
ttcctgtgcttccagcaggcccgtgctgtgggcctgaagggaacctacagagcgttcctg
tcctccaagcttcaagacctccacaccatcgtccgcaggtcggacagggagagcctcccc
atcatgaacctgaaggaccaagtgttgttcagcagttgggagtcgatctttggagacaac
gcgagcaaaatgagggataatgtaccaatctactcgttcgacggtagagatatcatcagg
gacagtgcatggccagagaaaatggtctggcatggatcgagcaacaaaggccacaggcaa
acagaccactactgtgaaacatggcgagcgggcgaccacgccgtcaccggtctggcttca
tcattacagagcggccacctcctgcagcaaacctccagcagctgctccggctcctacatc
gtcctctgcatcgagaacgccttcgtatcaccctccaaaaaataa
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