Hippoglossus hippoglossus (Atlantic halibut): 117754802
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Entry
117754802 CDS
T07778
Symbol
ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117754802 (ctr9)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
117754802 (ctr9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_17
TPR_10
TPR_7
TPR_11
TPR_6
ARM_TT21_5th
TPR_Slam
ARM_TT21_4th
ANAPC3
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
117754802
NCBI-ProteinID:
XP_034429966
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All DBs
Position
3:13483382..13491512
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AA seq
1154 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLSKLEKARLAFGRALELNSKCVGALVGLAV
LELNSKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
GFFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKYQNTEVL
LYLARALFKCGKLHECKQMLLKARHVAPSDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLSKAGDKMRFDLALAASEARQCSDLLSQAQYHVARARKQDEEEKE
LRAKQEQERDYLRQQMRKEQEDKRNREVEEQKKLLEQRALYVEKTKGLLSFAEGSKDMAK
EKKKGGGGGRRKKGDMDEFVNDDSDEDLPLKKKKKRRGGSGSEQEEGQDGDKKRRRRRPA
SDDEDGASRPKKQRKPKERRRIEKSQPERLPPSLKGKIKSKAIISSSESSSDEDGLKIAE
ERQQRDSGSGSDDEGGHKKRIASDSDSDGGRNQSDGGRNQSGSEAGSPRRSAGSGDDDSG
SDRPVKKRRVQRQSDSEQSDNESKRSRSGSDNESRPGSPVAASDRGSEVGSGNEGSPRRS
DNASEPEGSNNDSD
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcggctccatcgagatccctttacgggacacggacgaggttatcgagcttgac
ttcgaccagctgcccgaaggagatgaggtcatcagcatcctgaagcaggagcacacgcag
cttcacatatggatcgctttggcgctggagtactacaagcagggcaaaacagaagatttt
gtcaagcttttagaggcggctcgtatcgatggaaacctcgactacagagaccatgagaaa
gaccagatgacctgtctggacacattggcagcttactatgtccagcaagcacgtaaagag
aaaaacaaagatgccaagaaagagctcatcacgcaggccacgctgctgtacactatggca
gacaagatcatcatgtatgatcagaaccatttgctgggaagagcctgtttctgcctgctg
gaaggagacaagatggaccaggccgatgcccagttccactttgtcctcaatcagtccacc
aacaacatccctgctttgctcggtaaggcttgtatctccttcaataaaaaggattacagg
ggagcgctggcctactacaaaaaggctctacgtacaaaccccggctgcccagcggaggtg
aggctggggatgggtcactgtttcgtcaagctcagcaaactggagaaggctcgtttggct
ttcggtcgagccttggagctcaattcaaagtgcgtgggagctcttgttggtttggcggtg
ttagagctcaacagcaaggaggccgactccatcaagaacggcgtgcagctcctgtcgcga
gcgtacaccatcgaccccagcaaccccatggtgctcaaccacctcgctaaccacttcttc
ttcaaaaaggactacagtaaagtgcagcatctggccctccatgctttccacaacacagaa
gttgaagccatgcaggctgagagctgctaccagttagctcgctcgtttcacgtgcaggag
gattacgaccaagcgtttcagtattactaccaggccactcagtttgcctcgtccaccttt
gtgttgccctttttcgggctgggacagatgtacgtgtaccgaagagacaaagaaaatgca
gcacagtgctttgaaaaggttttgaaggcctaccccaacaactatgaaactatgaaaatc
ctggggtctctctatgcaacatctgacgatcaggaaaagagagacatcgccaaaggtcac
ttgaagaaggtaacagagcagtacccagatgatgtggaggcgtggatcgagctagcgcag
atcctggagcagaccgacatccagggggcgctgtccgcttatggcacagccacacgcatc
ctgcaggagaaggtgcaggccgatgttcctcctgagatcctcaacaacctgggagctctt
cacttccgactgggcaacctgggagaggccaagaaatatttcctggcatctctggaacgg
gccaaagctgagggagagcatgacgagcattactacaacgccatttctgtcaccacctcc
tacaatctggcccgtctgtatgaggctatgtgtgaattccacgaagctgagaaactctac
aaaaacatcctcagggagcatcctaactatgtggactgttacttgcgtcttggagcgatg
gctcgtgacaaaggaaacttttacgaagcttctgactggttcaaagaagccctgcaaatt
aatcaggatcacccggacgcttggtccctgataggaaaccttcacttggccaaacaggag
tggggaccgggccagaagaagtttgagcgtatcctgaagcagccgtccacacagaatgac
acctactccatgctggctctgggcaacgtgtggctgcagacgctgcaccagccgaccaga
gaccgtgaaaaggaaaagagacaccaggatcgagctctggcgatttacaaacaagtcctg
cgaaacgatgccaagaacctgtatgctgccaatggcattggtgctgttcttgctcacaag
ggcttcttccgagaggctcgtgatgtgtttgctcaggtgagagaggccacagcagacatc
agcgacgtttggctgaacctggctcacatctatgtcgaacagaagcagtacatcagcgct
gtgcagatgtatgagaactgcctgaagaaattttacaagtatcagaacactgaggtgctg
ctgtacctggcaagggcgctcttcaaatgtggaaaactccacgagtgcaagcagatgcta
ctgaaggcccgtcacgtggcgcccagcgacacggtgctgatgttcaatgtggccctggtg
cttcagagactggccactctggtgctgaaagatgagaagagcaacctgaaggctgtgctc
agcgctgtcaaagagctcgagctggctcacaggtatttcagctacctcagcaaagccgga
gataagatgaggtttgacctcgccctcgctgcgtctgaggctaggcagtgctctgacctg
ctgagtcaggctcagtaccacgtggcaagggccagaaagcaggatgaggaggagaaggag
cttcgggccaaacaggagcaggagagggactatctgcgccagcagatgaggaaagaacag
gaggacaaacggaacagagaggtagaggaacagaagaagctcctggagcagagagctttg
tacgtggagaaaaccaagggcctgctcagctttgccgaggggtcgaaggacatggccaaa
gaaaagaagaagggaggtggtggtggacgtcgtaagaaaggtgacatggatgagtttgtc
aacgacgactctgacgaggacctgccactgaagaagaagaagaagagaaggggtggaagc
ggcagcgagcaggaggagggtcaggatggagacaaaaagaggaggaggaggagacctgct
agtgatgatgaggatggagcatctcgacccaagaagcagcgtaaacccaaagaacgcagg
aggatcgaaaagagccagcctgagcgtttgccaccgtctctcaaaggaaagatcaagtct
aaggccataatctcctcctctgaatcatcttcagatgaggatggactgaaaatagctgaa
gaaagacaacaaagagacagtggttcaggatctgatgacgagggaggccacaaaaagcgc
atcgcttctgacagtgactcggatggaggtaggaaccaatcggatggaggtaggaaccaa
tccggcagcgaggctggcagccctcggcgctctgcgggctcgggggatgacgactctggc
agcgaccgcccagtgaagaagaggagggtgcagcgccagtccgactcggagcagtcagac
aacgagagcaagaggagtcggtcgggatcagataatgaatcccggccaggttcacccgtc
gctgcatcagaccgaggatctgaggtgggatcaggaaacgagggctcccctcgtcgctct
gacaacgcctccgaacctgaaggctccaacaatgacagcgactaa
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