Hippoglossus hippoglossus (Atlantic halibut): 117754930
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Entry
117754930 CDS
T07778
Symbol
si:dkey-230p4.1
Name
(RefSeq) trichohyalin
KO
K16469
rootletin
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hhip03037
]
117754930 (si:dkey-230p4.1)
Cilium and associated proteins [BR:
hhip03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
117754930 (si:dkey-230p4.1)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rootletin
Motif
Other DBs
NCBI-GeneID:
117754930
NCBI-ProteinID:
XP_034430181
LinkDB
All DBs
Position
21:437766..450351
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AA seq
1840 aa
AA seq
DB search
MELQERAELQWEVCRLQEKLAESQAEREELESRSRALNDRLCQSVSPSLGLSMHMEGEQR
EWRRRAREAREREARQALLIHRLQNKVVEYRDRCQRLDLQLQNQHTQLINTERIRDEHSD
SLESALIRLEEEQQRSLGLVETNALLREQLGQSEQANQSLRQDLKKLTDDWSRAVEEAEQ
RESDWLREKKCVSGGVGHHQAQLLSVWRSVVSLRRVCHSVKTAADRDLWQLRAEFSRLSS
SLLSSCDSVSSALRLNDPHIKPPPSSSTLLPLHPDSSASEPPLVSSSSLGTFVLAELEQR
WEELERPLQETEVSQLKQRIVELSHSLQEEHGLREEREREVERHRETERRLQSVSRAVVS
LSRVLSSCSRSMCVSSDSVLSLDLSSLLSVLSQTESALQGRHQELQGAELSLRRLSEENA
TLHLRLKQLEDDNQQLQTHTKHTQLELTHTLDTLSRERETLSSLRLQVEEVQMREEEVRR
ENNRLRSERDRQEERSLSVSLHQQLAQQQKQLSQSEVDRCQLITHVQTVQDVKHTLQGEV
ACLREELEEMTARRERCEEESEALKEKMERLTEEVEELRRTRREEKEEGKKERAAWQRER
EGLNEELGTRDGEVEALRRRKEGLTEEKEERQREVERLTGEVTERDMQISQMMERIQRAE
RERENLEEEVKKTELSLREEEVKREERRREIEALCDRMERLEREKEEREGEVERWRMRVE
EVEEEVERLRGRVEEVKRDREEERKKNERLKEEKEEAVGGLSKRLKEKVGEMELLRVTLN
VAKEECEEVKEEVQRRERSLERQMNAVREREEEVEELKERLRLLEEREEEGAREQEEVKE
KLKLMQEREEQLEMLLRETQDILEEERREGGEKDDRISLLVKELQEAQAETDGVRRRVRE
GEEVNDRLEEEVKEWSKKVELSTRESTKISCLLKEREEEVQQLREEREEEKKEKEEERRE
REERRRRMDIELMELDKEKRRLEEKLREVEEEQEEEREEKRRTREEKRRLEEKVREVEEE
REEEREEKRRMENRLRVMQEGREVEEKELQRVKEEKRRFEDKLKERLKEMEGQREVLRSK
EEEKRKLEDEVRKTKEERGSLVEKERDKHLLVEERGTIRVRELEEEKTGLTEELRKRERE
VTALREEVKREQREKKDAQEEVTVLKEEVQREQKRREETLEKWRQTEEIQKELRRSEREV
SLLTEEVQEEQRGKKEVQKELMRRREELKALREEVQRERDGAQEELRRRREEVTGAQREK
EEIEEKLRRTEREMMALREEVQREQRRSEETKEKLRQMEEVQEELTKRERQMFEELQKEE
REKKGVQKELMQRMEEMTALREEVKSEQREKEETEKNLRRTEEEVTTLGEEVRRREEVQE
ELRGVQQSLEVMTDNLSSLQSQVCDLSLSTERSKQEVKEKEQERQQMKEGLREALEEMTK
LKGLLQESHTEGERLRSALKDKKKEEVENPRTVIEEVEQQREEVEKERGQLEELRARTKA
LEWRRREVMEELEEALQAKEKTEEYRREAEECWRSRVEEMEEEKRVKLREIQTVKERQDE
VEESRAELSRVRATAAMLEEERHGQMRKRTDDKKRGGVEEEQQITSLLQEKEEVKRLLRL
RETEVYALTQRTEELEKDRDRVRLALERTEAALIGYKERTHQQEQSSGAGPNSGEGVGDR
LVVLQRLVAELELEQKRLNKKNLHLENTKEKLKRERHTLRDTLRQVEDERSRLRQQLTVS
SRSQESTDTTEEERLRSRVMELEEQVSQLHLSLAVDQQQRAEFIQQSSRNSEWLLSLRHD
LGDSLAIVTHSPIPSVLESETQRLDRSLREEELRMSLSQS
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcaggagagggcggagctccaatgggaggtgtgtcgtctgcaggagaagctg
gcggagagtcaggcggagagggaggagctggagtcgaggagcagagctctgaacgacagg
ctgtgccagtcagtgtctccctcgctcggcctctcgatgcatatggagggtgagcagagg
gagtggaggaggcgggcgagggaagcgagagagagggaggccagacaggcgctgctcatc
caccgcctgcagaacaaggtggtggagtacagagaccgatgtcagcgtcttgatcttcag
ctgcagaatcaacacacacaactgatcaacactgagaggatcagagatgaacacagtgac
tctctggagagcgccctcatcaggctcgaggaggaacagcagaggtcactcggtctggtt
gagaccaacgctctcttgcgggagcagctcggccaatcagagcaggccaaccagtccctg
aggcaggacctcaagaagctgacagatgattggtcgagagctgtggaagaggcggagcag
agagagtctgattggctgagagagaagaagtgtgtgtcaggtggtgtgggccatcatcag
gctcagttgttgtctgtgtggaggtctgtggtttctctgagacgagtctgtcactctgtc
aaaactgcagccgacagggacctgtggcagctgagggcggagttttctcgtctctcgtcg
tctcttctgtccagctgtgactctgtctcctctgccctgagactcaatgatcctcacatc
aaaccccccccctcctcctccactctgctcccccttcatccagactcctcggcctctgag
ccccctctcgtctcctcctcgtctctgggaaccttcgtgttggcggagttggagcagagg
tgggaggagctggagcgccccctgcaggagactgaagtgtcacagctgaagcagcggatt
gtggagctctctcactcgctgcaggaggagcacgggctgagggaggagagagagagagag
gtagagagacacagagagacagagagacgtcttcagtccgtcagtcgagctgtggtcagt
ctgtccagagtcctgagcagctgcagtcgttctatgtgtgtgtcctcggacagcgtcctc
agtctggacctgtcctccctgctgtctgtcctgtctcagacagagagcgccctccagggg
agacaccaggaactgcagggggcggagctctctctgcggcggctcagtgaggaaaacgca
accctgcacctccgactgaaacagctggaagacgacaaccagcagctacagacacacaca
aaacacactcagctggagctcacacacactctggacacactgagcagggagcgcgagacg
ttgtcttcactgcgtctgcaggtggaggaggtgcagatgagggaggaggaggtgaggagg
gagaacaacagactgaggagtgagagagacagacaggaggagaggtctctgtcggtgtct
ctccatcagcagctcgctcagcagcagaagcagctgtcgcagtcagaggtcgacagatgt
cagctgatcacacacgttcagactgtgcaggacgtcaaacacacactgcagggagaggtg
gcgtgtctgagagaggagctggaggaaatgacagccaggagagaaaggtgcgaggaggag
agtgaggcgctgaaagagaagatggagcgactgacagaggaggtggaggagctgaggaga
acaaggagggaagagaaggaagagggaaagaaggagagggcggcctggcaaagagaaagg
gaaggtctgaatgaggagttggggacgagggatggagaggtggaggccctgaggaggcgc
aaagagggattgactgaggaaaaggaggagagacagagggaggtggagagactgacgggg
gaggtgacggagagggatatgcaaatcagccagatgatggagagaatacagcgagcagag
agagagagggagaacctggaggaggaggtgaagaagacagagctgagtttgagagaggag
gaggtgaagagggaggagaggaggagagagatcgaggcactctgtgaccggatggagaga
ttagagagagagaaggaggagagagagggggaggtggagagatggaggatgagagtggag
gaagtggaggaggaggttgagcgactgaggggcagagtggaggaggtgaagagggacaga
gaggaggagaggaaaaagaacgagagattgaaagaggagaaggaggaagctgtaggagga
ctgtcgaagaggctgaaggagaaggtgggggagatggagcttctgagggtgacgctgaac
gtggcaaaggaggagtgtgaggaggtgaaggaggaggtgcagcggagggagcgcagcctg
gagcgacagatgaacgccgtgagagagagggaggaggaagtggaggagctgaaagagcga
ctgaggctgttggaggagcgggaggaggagggagcgagggagcaagaggaggtgaaggag
aaactgaagctgatgcaggagagagaggagcagctggagatgctgctgagagaaacacaa
gatattctggaggaggagagaagggagggaggagaaaaagacgacaggatctccctcttg
gtcaaagagctgcaggaggctcaggccgagaccgatggagtgaggaggagagtgagagag
ggcgaggaggtaaacgacaggctagaggaggaggtgaaggagtggagcaagaaggtcgag
ctgagtacgagggagtcaacaaagatcagttgtcttctgaaagaacgagaggaggaggtg
cagcagctgagagaggagagggaggaggagaagaaagaaaaagaggaggagaggagagag
agagaggaaaggagaaggaggatggacatcgagctgatggagttggataaggagaagagg
agactagaggagaaattgagggaggtggaagaggaacaggaggaagaaagggaggagaag
aggaggacgagggaggagaaaaggaggctggaggagaaagtgagggaggtagaggaggag
cgggaggaagagagggaggagaagaggaggatggagaacagactgagggtgatgcaggag
gggagagaggtcgaggagaaggagctgcagagggtgaaggaggagaaaaggaggtttgag
gataaactgaaagagaggttgaaagaaatggagggacagagggaggtgctgagaagtaaa
gaggaggagaaaagaaagctagaagatgaagtgaggaagaccaaagaggagcgagggagt
ttagtggagaaagagagagataagcacctcctggtggaggagcgagggacgatcagagtc
agagagctcgaggaggagaagacagggctgacggaggagctgaggaagagagagagggag
gtgacagcgctgagggaggaggtgaaaagagaacaaagagagaagaaagatgcacaggag
gaggtgacggtcctcaaggaggaggtccagagggagcaaaaaaggagggaggagaccctt
gagaagtggaggcagacagaggaaatacagaaggagctgaggaggagtgagagggaggtg
tctttactgacagaggaggtccaagaagaacagaggggaaagaaggaggtgcagaaggag
ctaatgaggaggagagaagagttgaaagctctgagggaggaagtgcagagggagagagat
ggagcgcaggaggagctgaggaggaggagagaggaggtaacaggggcacaaagagagaag
gaggagatagaggagaagctgaggaggacggagagggagatgatggctctgagggaggag
gtgcagagggaacaaagaaggagtgaggaaaccaaagagaagctgaggcagatggaggaa
gtacaagaggagctgacgaagagagagaggcagatgtttgaggagttacaaaaggaagag
agggagaagaagggggtgcagaaggagcttatgcagaggatggaggagatgacggctctg
agggaggaggtgaaaagcgaacaaagagagaaggaggagacagagaagaatctgcggagg
acagaggaggaggtgacgactcttggagaggaagtgcggaggagggaggaggtgcaggag
gagctgagaggagttcagcagagcctggaggtgatgacggacaacctgagctccctgcag
agtcaggtgtgtgacctgagtctgagcacggagcgatcgaagcaggaagtgaaggagaag
gagcaggagaggcagcagatgaaggagggactgagggaggcgctggaggagatgaccaaa
ctcaaagggctcctgcaggagagccacacagagggagagcgactgaggagcgctctgaag
gacaagaagaaggaggaggtggagaacccgaggacggtcatagaggaggtggagcaacag
agggaggaggttgaaaaggaaagaggacagctggaggagctgagagcaagaaccaaggcc
ctggagtggaggaggagggaggtgatggaggagctggaggaggctcttcaggcaaaggag
aagacagaggagtacaggagggaggctgaggagtgttggaggagcagagtggaggagatg
gaggaggagaagcgggtgaagctgagagaaatccagacggtgaaggagagacaggatgag
gtggaggagagcagggctgagctaagcagggtcagagccacggcggccatgttggaggag
gagagacatggacagatgaggaagaggacagatgacaagaagagaggaggagtggaggag
gagcagcagatcacgtctctgctgcaggagaaggaggaggtgaagaggctgctgaggctt
cgagaaactgaggtgtacgctctcactcagaggacggaggagctggagaaggacagagat
cgagtccgattggctctggagagaactgaggcagctctgattggctacaaggagagaacc
caccaacaggagcagagctcaggggcgggaccaaactcaggagagggtgttggggacaga
ctcgttgtcctccagcgtctcgttgctgaactggaactcgaacaaaaacgactgaacaag
aaaaacttgcatctggaaaatacaaaagaaaaactgaagagagagagacacacactgaga
gacacactgagacaggtggaggacgagcgatcgaggctgcgacagcagctgactgtaagc
agcagatctcaggagtctacagacaccacagaagaagagcgtctgcggagtcgagtgatg
gagctggaggagcaggtcagtcagctccatctctcattggctgtggatcaacagcagagg
gcggagtttatccagcagtcgtccagaaacagcgagtggctgctctccctaagacacgac
ctcggtgattcgctcgccatcgtcacgcacagtccaatcccatcagtcctggagtctgag
acacagcgattggaccgcagcctgagggaggaggagctgaggatgtcgctcagccaatca
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