Hippoglossus hippoglossus (Atlantic halibut): 117755295
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Entry
117755295 CDS
T07778
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117755295
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hhip01009
]
117755295
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hhip04515
]
117755295
Protein phosphatases and associated proteins [BR:
hhip01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117755295
Cell adhesion molecules [BR:
hhip04515
]
Cadherins
Protocadherins
117755295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
Cadherin_C_2
Big_9
Motif
Other DBs
NCBI-GeneID:
117755295
NCBI-ProteinID:
XP_034430865
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All DBs
Position
3:8921269..9116020
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AA seq
1236 aa
AA seq
DB search
MDLKDYYLLGTLLACIWLDPSIAQELIYPIREELQENVLIGNIPKDLNISHTNAATGTSA
NLVYRLVSKAGDNPLVRVLSSTGEIFTTSNRIDREKLCPGPSFEDSECSFEIEVVILPND
YFRLIKIKIVVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYEL
INGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGSPQKSSTAILQVT
VTDVNDNRPVFKENQIEVHIPENSPIGTSVVQLLATDADVGANAEIRYVFGTQVSPATKR
LFALNTTSGLITVQRPLDREETAIHKLSVLASDGSSSPARATVTINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDKDTDINGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDYEGTKEYNFKIVASDSGKPSLNQTALVRVRLEDENDNPPIFTQPVIELAVMEN
NKRDLFLTTLSATDEDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREDQDRFLFT
ITARDNGTPPLQTQAAVIVTVLDENDNNPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVSLSILNDNENFILDPYSGVIKSNVSFDREQQSSYTFDVRAVDSGRPPCSSAAKV
TINVIDVNDNTPIVIYPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
NKGLFRIDPVTGNITLEEKPAVTDIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNS
TLIYDLIRRTMETPIDRNIGESSETYQSGDYLTIMIAFVTGAFVVIIVIFVTVLLRCRHA
SRFKAAQRKKQGAEWMSPNTENKQNKKKKRKKRKSPKSSLLNFVTIEGNKPDDPAHEPIN
GTISLPTELEEQGIGRFDWNATPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKH
HVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPMHTRQQGTLTRART
ELNPEYLDLRPRAELNPEYWTPCTPLSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGSLL
TQPLPLVQAQDDFYEQASPDKRTEADGNSDPNSDGPLGPRGLVEATEMCTQECLVLGHSD
NCWMPPTLGTYQQPKSPVSSFGSQREWGPKDKLLNGHTLTRAWKNESGRSEHFGDRKQFG
SGEGHFNSSGMADIPLVSLKSCQPASCPDSPKDQQL
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaaagactattacctgttgggcaccctactcgcctgcatatggctcgatcct
tcgatagcccaagagctgatctaccccatcagagaggagttgcaggaaaatgtcctcatt
ggaaacataccaaaggacctaaacatatcccatacaaatgctgccactggaacaagtgct
aatctggtctaccggctcgtctccaaagcgggagataaccctctggtccgcgttctgagc
agcactggcgagattttcacaacatcaaaccgaatcgacagggagaagttgtgccccggt
ccctcgtttgaggacagcgagtgctcctttgaaattgaagtggtcatcctgcctaatgat
tatttcaggctgattaagatcaaaatagtcgtcaaagacacaaatgataatgcccccatg
ttcccgtcccctgtgatcaacatctctatccccgagaacacgctcattaacagccgcttt
gctattccctccgccactgacccagacactggccccaacagtgtccacaaatatgagctg
atcaacgggcaaagtgccttcggcttagacatagtggaaacgcctgagggggagaagtgg
ccccagctcattgtgcagcagaatctggacagagagcagaaggatacatacgtaatgaag
atcaaggtggaggacggtggcagtccgcagaaatccagcactgccattctacaagttaca
gtaacagatgtcaatgataacaggccggtgtttaaagagaaccagatagaggtgcacata
ccggagaactcccccattggcacgtctgtggtgcagcttctggccacggatgcagacgtg
ggggcaaatgcagagatacgttatgtatttgggactcaggtgtctcctgccacgaaaaga
ctctttgcactgaacacaacatctggcctaattacagtgcagagacccctggacagagaa
gaaacagctattcacaagctctctgttttagccagtgatggcagctccagtcctgccaga
gctactgtcaccataaatgtgactgatgttaatgacaatccgcctaatatagacctgagg
tacataatcagtcccattaatggcactgttttcctgtcggagaaggatcccatcaatacc
aagatagcactcatcacggtgtcagacaaagacaccgacatcaacggcaaggtcatttgt
ttcatcgagaaggatgtgcccttccatctcaaagccgtgtacgacaaccagtatctgctg
gagacatccgcactgctcgactacgaagggaccaaggaatacaactttaaaattgtagcg
tcagactctgggaaaccgagcctgaatcagactgccttggttagagtgaggctggaggat
gagaatgacaacccacctatttttactcagccagtcattgagctggctgttatggaaaac
aacaaacgtgacctgttcctcaccactctcagcgccacggacgaggacagcgggaagaac
gcagagattgtttatcagctgggaccgaacgcatcgttcttcgacctcgaccgcaaaaca
ggggtgctgactgcgtcccgggtttttgaccgggaggatcaggataggtttctcttcacc
ataacggcaagagataacgggacccccccactgcaaacgcaggcagctgttattgtaact
gtgctggatgaaaacgataacaaccccaagttcacgcataaccactttcagttttttgtg
tcggagaatctacctaaatacagcacggtgggggtgataactgtgacggactcagacgct
ggagaaaacgctgctgtttctctctccatcctgaatgacaatgagaactttatactggat
ccttactccggggtgataaaatccaatgtgtcattcgatagggagcaacagagctcctac
acttttgatgtcagggctgtggacagtggcaggcccccttgctcctcagctgccaaggtg
accatcaatgtcattgacgtgaacgacaacacccccatcgtcatctaccccccctccaac
acatctttcaagctcgttccgctctcctccatcccaggatctgtggtcgcagaagtgttc
gctgtagatggtgataccggaatgaacgcagaactcaaatacacgattgtgagtggaaac
aacaagggtctgttcagaattgaccccgtcacagggaatattactctggaggagaaacca
gcggtgactgacataggcttacacagattagttgtcaatatcagtgacctgggatatcct
aaatctctccatactctggtgctggtatttctgtatgtcaatgacactgtgggcaactca
acgctcatatatgacctcatccgacgcaccatggagaccccaatagaccggaacataggg
gagagcagtgaaacttatcaaagtggtgactatttaaccatcatgatagcctttgttacc
ggcgcctttgtggtgatcattgtcatctttgtcactgtgctgctgcgctgtcgccacgcg
tcgaggtttaaagcggcacagagaaaaaagcagggagccgagtggatgtcgcccaacacg
gagaacaagcagaacaagaagaaaaagcgcaagaaaaggaaatccccaaaaagttccctg
ctcaactttgtcaccattgaggggaacaaacctgacgatcctgcccacgagccaatcaac
ggaaccatcagcttgccaaccgagctggaggagcaagggattggacgctttgattggaat
gccacacccaccacaaccttcaaacccagcagccccgacctggcccggcactacaagtcc
gcctcgccacaatcggccttccacctcaaggctgacacgccggtgtcggtgaagaagcac
cacgtgattcaggagctcccattggataacacatttgtcgggggctgcgacaccctttcc
aagaggtcctccacgagctccgaccacttcagtgcctcagagtgcagctcccaaggaggg
ttcaagacgaagggccccatgcacaccagacagcagggaacattaactcgtgcccgaact
gaactgaaccctgagtatctggaccttcgtccacgagctgagctgaaccctgagtactgg
accccttgcacccctttatcgcagaggcgcgtcacgtttcacctgccggacggctctcag
gagagctgcagtgacagcggtctgggggaccacgagcctgtaggcagtggctccctcctc
acacaacctctccctctggtgcaggcgcaggacgacttctacgagcaggcctcccccgac
aagaggaccgaagccgacggcaactccgatcccaactccgatggccccctgggaccccgt
ggcctcgtggaagctacagagatgtgcacgcaggagtgcctagtcctgggacattcagac
aactgctggatgcccccgacgttgggaacgtaccagcagcccaaatcgcccgtgtccagc
tttgggtctcagagggagtggggacccaaggacaaacttctcaatggacatactctgacc
agagcctggaagaatgagagcgggcggtcagagcattttggtgacaggaagcagtttggg
agcggagagggacacttcaacagcagtggaatggctgatattccattggtgagtctgaag
tcctgccagccagcctcctgcccggacagccccaaggaccagcagctataa
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