KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117755347
Entry
117755347         CDS       T07778                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510  Focal adhesion
hhip04512  ECM-receptor interaction
hhip04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117755347 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117755347 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117755347 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hhip04147]
    117755347 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:hhip00536]
    117755347 (col4a1)
Exosome [BR:hhip04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117755347 (col4a1)
Glycosaminoglycan binding proteins [BR:hhip00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117755347 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117755347
NCBI-ProteinID: XP_034430950
LinkDB
Position
21:18781340..18819525
AA seq 1640 aa
MLLPSGALFLLAAFYCSVDLTQAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGAMGPAGGMGEPGASGMKGVRGPPGLHGFPGNPGLPGINGNDGPPGSSGIPGCN
GTKGERGLDGTSGFPGLQGPPGIPGFPGIKGDAGGVIGIVPVKGDKGFPGTPGLPGSIGP
SGPTGPPGPRGYQGPKGELGPPGPAGEKGDKLAFVSEKGEKGEQGFRGPPGPPGPPSEGV
EGHTTVYVPGHTGDRGLQGDKGEKGICTPHLNGIKGEPGPPGPRGKPGKDGDYGTKGDKG
FPGGPGYVGSQGEKGERGPPGFGHGSPGPPGPHGLPGLQGEKGFPGPQGEVGQPGRHSEG
PRGERGQKGDVGEKGERGIEGESLVGPPGQPGIDGPPGPPGLPLNSSKCDITRGNLGPAG
PPGLQGEVGQKGDRGDTCVQCEAFGPPGLTGPHGPKGEHGPPGPVGGKGEKGQSGTPGQP
GRPGTLGHSGLRGLPGAVGEPGDISLAPGLKGDKGLPGFAGSQGQPGVNGQSGRDGLPGV
PGLKGEPAKDGLKGERGFDGDPGRIGTPGERGPPGLPGIGQHGEAGEKGSPGRPGIPGAS
GGLGAKGEPGVGVSSPGPQGVTGPRGETGRSGGQGDRGLVGDAGLPGFPGQKGEQGPYGI
GFPGPSGPKGISGIPGASGLPGEPGRPGQDGFSGQPGSPGQKGEPGRGLPGPKGLQGLPG
IPGFQGEKGSIGPHGIPGQEGQTGPPGSQGITGDMGPPGPSGLVGLPGEPGKGSTGAPGT
QGQPGGPGPHGSVGVKGERGYPGPPGLDMPGLQGEKGASGFPGPSGSKGLPGRTGLPGRD
GLLGSQGSKGEMGVIGTPGIQGFPGKAGTPGSAGLRGDPGITGQRGGTGQSGPKGERGEP
GLQGPPGNMTEVDMEHMKGEKGDLGDFGNPGVTGDKGHRGLSGDSGMPGKDGEPGLPGQP
GNKGDPGFPGEPGSMGQPGQKGSVGEMGIPGVLGPKGTKGDFGTSGHPGFRGTDGLKGDR
GAAGDPGIGIPGHPGEKGHSGQPGFPGTPGDKGQKGPEGMPGQPGLQGSKGENGSLGYPG
QQGRPGEKGTPGLPGSAGEHGREGRPGEGGLQGPPGVPGEKGEHGVDGIPGSSGERGEPG
FPGRGFPGPSGDFGGKGDKGSPGFPGTPGHPGVPGIKGDKGLSGSQGPHGETGERGVQGI
SLEGPKGVTGEPGKPGEAGSPGAPGPGGVSGRDGQKGDRGNQGLPGYQGETGTKGDPGFI
GNPGQAGLPGIDGQKGEMGLHGVPGFPGVKGNFGDIGFKGEFGDRGFTGEKGSEGPPGTP
GPHTYIKGDIGFPGIQGLPGPQGPSGFPGQKGLQGMTGIAGLKGEDGLPGYHGQAGGKGE
PGLSGPQGPRGYPGPPGPDGVPGQVGQPGPSSMEHGFLVTRHSQTVEVPYCPQGTSLIYD
GYSLLYVQGNARSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGEGIKPFISRCSVCEAPAMVIAVHSQSIMIPQCPLGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDDEMFTKPVPTT
LKAGSLRTHISRCQVCMKRT
NT seq 4923 nt   +upstreamnt  +downstreamnt
atgctgttaccgtctggcgccctgttcctgctggcggctttctactgcagcgtagacctg
acacaggctgagggttgtgggacatcatgtgggaaatgtgactgcagcggcgtgaaagga
gcaaagggtgagcggggatttcctggtcttcaaggtaacatgggatttcctgggatgcag
ggccctgaggggcctccaggagcaatgggtcccgcgggaggtatgggtgaaccaggggct
tctggaatgaaaggagtgaggggtcctcctggtctgcacggtttcccaggaaacccagga
ctaccaggcatcaatggaaacgatggcccaccaggttcatcaggtatcccaggatgcaat
gggactaaaggagaaagaggactggatggcacctctggttttcctggtcttcaaggacct
ccgggcatcccaggatttcctggaataaagggtgatgctggtggtgtgatcgggattgtt
cccgtgaaaggagacaaaggattccctggcacacctggattacctggatcgatcggacct
tctggacccaccggacctccaggacctcgcggctaccaaggacccaaaggtgagctaggc
cccccaggccctgctggagagaagggtgacaaactggcttttgtgagtgaaaaaggagaa
aagggtgaacaaggatttcggggcccccccggtcccccaggacctccatcagagggagtg
gaaggacacaccacagtctacgtacctggacatacgggagatagaggacttcaaggagat
aaaggagagaaaggcatctgcacacctcatctcaatggtattaaaggtgaacctggacca
cctggacccagaggtaaacctggaaaagatggagattatgggacaaagggagataaagga
tttccaggaggtcccggatacgttggttcccagggtgaaaaaggagaacgaggaccacca
ggttttggtcacggttcccctggccctcctggtccgcatggtctccctgggttacaagga
gaaaaaggtttccctgggcctcagggagaagtaggtcaaccaggccgacacagtgaaggg
cctcgaggagagaggggtcagaagggagacgtgggtgagaaaggagagaggggtatagag
ggagagtctctggttggtcctccaggacaaccaggtatcgatggcccccctggaccaccc
ggactcccacttaattcgagtaaatgtgacatcacgagaggtaatcttggcccagctgga
cctccggggttacaaggggaagttggacaaaaaggtgaccgaggagatacctgtgttcag
tgtgaggctttcggcccacctggattaactggtccccatgggcctaagggagagcatgga
ccacccggtccagttggaggcaaaggagaaaagggtcagtcaggcactcccggacaacct
ggacgacctggtactctgggccattctgggttgcggggacttcctggtgctgttggtgag
cctggcgacatttccctagctcctggtctgaagggagacaaaggtcttcctggttttgct
ggttcacaggggcagccaggagtgaatggacagtcagggagagacggcctcccgggtgta
cctggcctcaaaggagaacctgcgaaagacggccttaagggtgagcgaggatttgatggg
gaccctggtcgtattggaaccccaggagaaagaggtcctcctggtcttccaggcatcggg
caacatggagaggctggagagaaaggcagtccagggagaccaggaattcctggagcttct
ggaggactaggtgcaaaaggggagccaggtgtgggtgtgagctctccaggacctcaggga
gtaactggaccacgtggagaaactggcagatctggaggtcaaggggacagaggtttggtg
ggagatgcagggttgccaggtttccctggacagaaaggtgaacaaggaccctatggaata
ggttttccagggccatcaggtccaaaaggaatcagtggaattccaggagcttcaggatta
ccaggagagccaggaagaccaggacaggacggtttcagtggacaacctggttcacctgga
caaaaaggtgaaccagggcgtggtcttcctggcccaaaaggtttgcagggccttccggga
attcctggtttccagggagagaagggtagcattggaccacatggtattcctgggcaagaa
gggcagacgggacctcctggatctcagggaatcacaggtgacatgggacccccagggcct
tctggactggttggcttaccaggtgaaccaggaaaaggctcaactggagcgcctggaaca
cagggacaacctggagggcccggaccacacggtagcgtaggtgtaaagggagagagaggc
taccctggacctcctggtctggacatgccgggacttcagggagagaagggagcctccgga
ttcccaggaccctcgggctccaaaggactgccagggcgaacgggcttgccaggcagggac
gggctgttaggaagccaaggttctaagggtgaaatgggggtcattgggacaccgggaata
cagggatttcctggaaaagctggtacacctggatctgctggtctgagaggtgatcctggt
atcactggacaaagaggtggtactggacagtctggacctaaaggagaaaggggagagcca
ggtcttcagggacctccagggaacatgaccgaagttgacatggagcacatgaagggagag
aagggagacctcggagactttggtaaccctggcgtcaccggagacaagggccaccgtggc
ctgtctggagactctggtatgccaggcaaagatggagagcctggattacctggacaacca
ggtaacaaaggagaccctggttttcctggagagcctggcagcatgggacaacctggacag
aagggcagtgtaggagagatgggaataccaggtgtgttgggtccaaaaggtactaaagga
gactttggcacatcgggacatccaggattcagaggcactgatggactgaaaggagacagg
ggagcagctggtgatccaggtattgggatcccgggacatccaggagaaaagggtcattca
ggtcagccaggatttccaggaacaccaggagacaagggtcagaagggtcctgagggtatg
cccggccaaccaggactgcaaggctccaaaggagaaaatggaagcctcgggtacccaggt
cagcaaggtagaccaggtgagaagggtacccctgggctccctgggtcagcaggagagcac
ggtcgtgaaggccgtcccggtgaaggcggcttgcagggaccccctggtgttcctggagag
aagggagagcatggagtggatggcatcccaggatcctcaggggagagaggagagccaggt
ttccctggccgaggtttccctgggccatctggagattttggtggcaaaggtgacaaaggt
agtcctggcttccctggtactccaggtcaccctggagtccctggtatcaaaggtgataag
ggactttcaggatcacagggaccacatggtgagacaggagagaggggagtccaaggtatc
tctctcgagggccccaagggagttacgggagagccaggaaaacctggagaagcaggatcc
ccaggagcaccgggacccggtggtgtgtcaggcagagatggacaaaagggagatagagga
aatcagggtctccctggttaccagggagagacaggaacgaagggtgaccccggatttatt
ggaaatcctggacaagctggactcccaggtatcgatggacagaaaggagagatgggacta
catggtgtcccagggttcccaggtgtaaagggtaacttcggggacattggattcaaagga
gagtttggagacagaggattcactggagaaaaaggtagtgaaggcccccctggtacccct
gggccccacacctacattaaaggagacattggcttcccaggaattcaaggtcttccagga
ccacaggggccatctgggttccctggacagaaaggactgcaaggtatgacaggtattgct
ggactgaaaggcgaagacggccttcctggataccacggtcaggctggaggcaaaggagag
cccggtctgtcagggccacaaggacccaggggatatccgggccccccaggacctgacggc
gttccaggtcaagtgggtcaacctggcccctcctccatggagcatgggtttctggtaacc
cgtcacagccaaacagtggaggtgccatattgtcctcagggaacatcgctcatatatgat
ggctactccttgctctacgtacaaggcaatgcacggtctcatggacaggacttaggtacg
gcaggcagctgtttacgaaagttcagccccatgcccttcctgttctgtaacatcaacaac
gtgtgcaactttgcctcacgtaacgactactcctactggctcacctcccccgagcccatg
cccatgagcatggctcctatcactggtgaaggcatcaaacccttcatcagcaggtgttct
gtgtgtgaggctccagccatggtgatagcagttcacagtcagtccatcatgatccctcag
tgccctcttggctgggactctctgtggattggctactcctttgtcatgcacaccagcgcc
ggtgctgagggttcaggtcaggctctggcctctccaggttcctgtctggaggagttccgc
agcgctccgttcatcgagtgtcacggtcgcggaacctgcaactactacgccaactcctac
agcttctggctcgccaccatcgaagatgatgagatgtttacgaaacccgtcccgacgaca
ctaaaagcaggcagtctcagaacacacatcagccgctgtcaggtgtgcatgaagaggaca
taa

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