KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117755347
Entry
117755347         CDS       T07778                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04382  Cornified envelope formation
hhip04510  Focal adhesion
hhip04512  ECM-receptor interaction
hhip04518  Integrin signaling
hhip04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117755347 (col4a1)
   04518 Integrin signaling
    117755347 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117755347 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117755347 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    117755347 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hhip04147]
    117755347 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:hhip00536]
    117755347 (col4a1)
Exosome [BR:hhip04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117755347 (col4a1)
Glycosaminoglycan binding proteins [BR:hhip00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117755347 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117755347
NCBI-ProteinID: XP_034430950
LinkDB
Position
21:18781340..18819525
AA seq 1640 aa
MLLPSGALFLLAAFYCSVDLTQAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGAMGPAGGMGEPGASGMKGVRGPPGLHGFPGNPGLPGINGNDGPPGSSGIPGCN
GTKGERGLDGTSGFPGLQGPPGIPGFPGIKGDAGGVIGIVPVKGDKGFPGTPGLPGSIGP
SGPTGPPGPRGYQGPKGELGPPGPAGEKGDKLAFVSEKGEKGEQGFRGPPGPPGPPSEGV
EGHTTVYVPGHTGDRGLQGDKGEKGICTPHLNGIKGEPGPPGPRGKPGKDGDYGTKGDKG
FPGGPGYVGSQGEKGERGPPGFGHGSPGPPGPHGLPGLQGEKGFPGPQGEVGQPGRHSEG
PRGERGQKGDVGEKGERGIEGESLVGPPGQPGIDGPPGPPGLPLNSSKCDITRGNLGPAG
PPGLQGEVGQKGDRGDTCVQCEAFGPPGLTGPHGPKGEHGPPGPVGGKGEKGQSGTPGQP
GRPGTLGHSGLRGLPGAVGEPGDISLAPGLKGDKGLPGFAGSQGQPGVNGQSGRDGLPGV
PGLKGEPAKDGLKGERGFDGDPGRIGTPGERGPPGLPGIGQHGEAGEKGSPGRPGIPGAS
GGLGAKGEPGVGVSSPGPQGVTGPRGETGRSGGQGDRGLVGDAGLPGFPGQKGEQGPYGI
GFPGPSGPKGISGIPGASGLPGEPGRPGQDGFSGQPGSPGQKGEPGRGLPGPKGLQGLPG
IPGFQGEKGSIGPHGIPGQEGQTGPPGSQGITGDMGPPGPSGLVGLPGEPGKGSTGAPGT
QGQPGGPGPHGSVGVKGERGYPGPPGLDMPGLQGEKGASGFPGPSGSKGLPGRTGLPGRD
GLLGSQGSKGEMGVIGTPGIQGFPGKAGTPGSAGLRGDPGITGQRGGTGQSGPKGERGEP
GLQGPPGNMTEVDMEHMKGEKGDLGDFGNPGVTGDKGHRGLSGDSGMPGKDGEPGLPGQP
GNKGDPGFPGEPGSMGQPGQKGSVGEMGIPGVLGPKGTKGDFGTSGHPGFRGTDGLKGDR
GAAGDPGIGIPGHPGEKGHSGQPGFPGTPGDKGQKGPEGMPGQPGLQGSKGENGSLGYPG
QQGRPGEKGTPGLPGSAGEHGREGRPGEGGLQGPPGVPGEKGEHGVDGIPGSSGERGEPG
FPGRGFPGPSGDFGGKGDKGSPGFPGTPGHPGVPGIKGDKGLSGSQGPHGETGERGVQGI
SLEGPKGVTGEPGKPGEAGSPGAPGPGGVSGRDGQKGDRGNQGLPGYQGETGTKGDPGFI
GNPGQAGLPGIDGQKGEMGLHGVPGFPGVKGNFGDIGFKGEFGDRGFTGEKGSEGPPGTP
GPHTYIKGDIGFPGIQGLPGPQGPSGFPGQKGLQGMTGIAGLKGEDGLPGYHGQAGGKGE
PGLSGPQGPRGYPGPPGPDGVPGQVGQPGPSSMEHGFLVTRHSQTVEVPYCPQGTSLIYD
GYSLLYVQGNARSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGEGIKPFISRCSVCEAPAMVIAVHSQSIMIPQCPLGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDDEMFTKPVPTT
LKAGSLRTHISRCQVCMKRT
NT seq 4923 nt   +upstreamnt  +downstreamnt
atgctgttaccgtctggcgccctgttcctgctggcggctttctactgcagcgtagacctg
acacaggctgagggttgtgggacatcatgtgggaaatgtgactgcagcggcgtgaaagga
gcaaagggtgagcggggatttcctggtcttcaaggtaacatgggatttcctgggatgcag
ggccctgaggggcctccaggagcaatgggtcccgcgggaggtatgggtgaaccaggggct
tctggaatgaaaggagtgaggggtcctcctggtctgcacggtttcccaggaaacccagga
ctaccaggcatcaatggaaacgatggcccaccaggttcatcaggtatcccaggatgcaat
gggactaaaggagaaagaggactggatggcacctctggttttcctggtcttcaaggacct
ccgggcatcccaggatttcctggaataaagggtgatgctggtggtgtgatcgggattgtt
cccgtgaaaggagacaaaggattccctggcacacctggattacctggatcgatcggacct
tctggacccaccggacctccaggacctcgcggctaccaaggacccaaaggtgagctaggc
cccccaggccctgctggagagaagggtgacaaactggcttttgtgagtgaaaaaggagaa
aagggtgaacaaggatttcggggcccccccggtcccccaggacctccatcagagggagtg
gaaggacacaccacagtctacgtacctggacatacgggagatagaggacttcaaggagat
aaaggagagaaaggcatctgcacacctcatctcaatggtattaaaggtgaacctggacca
cctggacccagaggtaaacctggaaaagatggagattatgggacaaagggagataaagga
tttccaggaggtcccggatacgttggttcccagggtgaaaaaggagaacgaggaccacca
ggttttggtcacggttcccctggccctcctggtccgcatggtctccctgggttacaagga
gaaaaaggtttccctgggcctcagggagaagtaggtcaaccaggccgacacagtgaaggg
cctcgaggagagaggggtcagaagggagacgtgggtgagaaaggagagaggggtatagag
ggagagtctctggttggtcctccaggacaaccaggtatcgatggcccccctggaccaccc
ggactcccacttaattcgagtaaatgtgacatcacgagaggtaatcttggcccagctgga
cctccggggttacaaggggaagttggacaaaaaggtgaccgaggagatacctgtgttcag
tgtgaggctttcggcccacctggattaactggtccccatgggcctaagggagagcatgga
ccacccggtccagttggaggcaaaggagaaaagggtcagtcaggcactcccggacaacct
ggacgacctggtactctgggccattctgggttgcggggacttcctggtgctgttggtgag
cctggcgacatttccctagctcctggtctgaagggagacaaaggtcttcctggttttgct
ggttcacaggggcagccaggagtgaatggacagtcagggagagacggcctcccgggtgta
cctggcctcaaaggagaacctgcgaaagacggccttaagggtgagcgaggatttgatggg
gaccctggtcgtattggaaccccaggagaaagaggtcctcctggtcttccaggcatcggg
caacatggagaggctggagagaaaggcagtccagggagaccaggaattcctggagcttct
ggaggactaggtgcaaaaggggagccaggtgtgggtgtgagctctccaggacctcaggga
gtaactggaccacgtggagaaactggcagatctggaggtcaaggggacagaggtttggtg
ggagatgcagggttgccaggtttccctggacagaaaggtgaacaaggaccctatggaata
ggttttccagggccatcaggtccaaaaggaatcagtggaattccaggagcttcaggatta
ccaggagagccaggaagaccaggacaggacggtttcagtggacaacctggttcacctgga
caaaaaggtgaaccagggcgtggtcttcctggcccaaaaggtttgcagggccttccggga
attcctggtttccagggagagaagggtagcattggaccacatggtattcctgggcaagaa
gggcagacgggacctcctggatctcagggaatcacaggtgacatgggacccccagggcct
tctggactggttggcttaccaggtgaaccaggaaaaggctcaactggagcgcctggaaca
cagggacaacctggagggcccggaccacacggtagcgtaggtgtaaagggagagagaggc
taccctggacctcctggtctggacatgccgggacttcagggagagaagggagcctccgga
ttcccaggaccctcgggctccaaaggactgccagggcgaacgggcttgccaggcagggac
gggctgttaggaagccaaggttctaagggtgaaatgggggtcattgggacaccgggaata
cagggatttcctggaaaagctggtacacctggatctgctggtctgagaggtgatcctggt
atcactggacaaagaggtggtactggacagtctggacctaaaggagaaaggggagagcca
ggtcttcagggacctccagggaacatgaccgaagttgacatggagcacatgaagggagag
aagggagacctcggagactttggtaaccctggcgtcaccggagacaagggccaccgtggc
ctgtctggagactctggtatgccaggcaaagatggagagcctggattacctggacaacca
ggtaacaaaggagaccctggttttcctggagagcctggcagcatgggacaacctggacag
aagggcagtgtaggagagatgggaataccaggtgtgttgggtccaaaaggtactaaagga
gactttggcacatcgggacatccaggattcagaggcactgatggactgaaaggagacagg
ggagcagctggtgatccaggtattgggatcccgggacatccaggagaaaagggtcattca
ggtcagccaggatttccaggaacaccaggagacaagggtcagaagggtcctgagggtatg
cccggccaaccaggactgcaaggctccaaaggagaaaatggaagcctcgggtacccaggt
cagcaaggtagaccaggtgagaagggtacccctgggctccctgggtcagcaggagagcac
ggtcgtgaaggccgtcccggtgaaggcggcttgcagggaccccctggtgttcctggagag
aagggagagcatggagtggatggcatcccaggatcctcaggggagagaggagagccaggt
ttccctggccgaggtttccctgggccatctggagattttggtggcaaaggtgacaaaggt
agtcctggcttccctggtactccaggtcaccctggagtccctggtatcaaaggtgataag
ggactttcaggatcacagggaccacatggtgagacaggagagaggggagtccaaggtatc
tctctcgagggccccaagggagttacgggagagccaggaaaacctggagaagcaggatcc
ccaggagcaccgggacccggtggtgtgtcaggcagagatggacaaaagggagatagagga
aatcagggtctccctggttaccagggagagacaggaacgaagggtgaccccggatttatt
ggaaatcctggacaagctggactcccaggtatcgatggacagaaaggagagatgggacta
catggtgtcccagggttcccaggtgtaaagggtaacttcggggacattggattcaaagga
gagtttggagacagaggattcactggagaaaaaggtagtgaaggcccccctggtacccct
gggccccacacctacattaaaggagacattggcttcccaggaattcaaggtcttccagga
ccacaggggccatctgggttccctggacagaaaggactgcaaggtatgacaggtattgct
ggactgaaaggcgaagacggccttcctggataccacggtcaggctggaggcaaaggagag
cccggtctgtcagggccacaaggacccaggggatatccgggccccccaggacctgacggc
gttccaggtcaagtgggtcaacctggcccctcctccatggagcatgggtttctggtaacc
cgtcacagccaaacagtggaggtgccatattgtcctcagggaacatcgctcatatatgat
ggctactccttgctctacgtacaaggcaatgcacggtctcatggacaggacttaggtacg
gcaggcagctgtttacgaaagttcagccccatgcccttcctgttctgtaacatcaacaac
gtgtgcaactttgcctcacgtaacgactactcctactggctcacctcccccgagcccatg
cccatgagcatggctcctatcactggtgaaggcatcaaacccttcatcagcaggtgttct
gtgtgtgaggctccagccatggtgatagcagttcacagtcagtccatcatgatccctcag
tgccctcttggctgggactctctgtggattggctactcctttgtcatgcacaccagcgcc
ggtgctgagggttcaggtcaggctctggcctctccaggttcctgtctggaggagttccgc
agcgctccgttcatcgagtgtcacggtcgcggaacctgcaactactacgccaactcctac
agcttctggctcgccaccatcgaagatgatgagatgtttacgaaacccgtcccgacgaca
ctaaaagcaggcagtctcagaacacacatcagccgctgtcaggtgtgcatgaagaggaca
taa

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