Hippoglossus hippoglossus (Atlantic halibut): 117755440
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Entry
117755440 CDS
T07778
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117755440 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117755440 (xrcc5)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
117755440 (xrcc5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA
DUF6005
DUF4599
Motif
Other DBs
NCBI-GeneID:
117755440
NCBI-ProteinID:
XP_034431143
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Position
21:11033108..11041679
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AA seq
729 aa
AA seq
DB search
MAGSKSALVLCMDVGFSTSNSAPGEATPFELAKKIVQKFVQRQVFAETKDEVALVLFGTD
STQNPLHQDDQYQHITIYRHLMVAGFELLEEIEKQVIPESQHADWLDALVVCMDLLQTET
DGKKFDRLNIVFLTDLNSQASADNVDAIIENLKKAGITLQFFLPFPVKDHDKEGGGGVDE
DSTGPGHPGTGKGLSREQKNSLDIMKHIMLNLDEDEGLEEVYTFRNAIEQLSMFKRIERR
PMAWPCQLTIGSSLSIRIVGYKAVTEEKLKKIWFTVDAQTNQKDDVKRETVYCLDDDNET
EVQKDDTIQGFRYGSDIVPFSKVDQDQMKYKHDGKCFAVLGFAKQSMVRHHQFMGNQVLK
IFAGRDDEHAGVALSAVIRALDELKMVAIVRYAYDRRCNPQIGAAFPYIKQDYQCLMYFQ
MPFAEDLRQFTFPSLENNKKFTPSDTQLSAVDSLIDSMMLVEEDKNGEKKDLFKPHHIPN
PAFQRHFQCLHHRGVSPGTPLPPIEPWLKAALELPEVISERCQVPLEEMKKKFPLTEVEK
KKKLKTSAQIFGKDADELDAKKVKGDEEEEEEYNLADIAEGSVTSVGSVDPARDFCTLIK
KKSLPFGEVCQQLTHRIEQLLSNKNTQYYMKSISCIQAFREQSVKLGNADLYNSYLQSLK
RSIPNRGLEVFWDLLVQDALTLISKDEVEGSTVSKSEANQFLVAEEKKEETAAPPAEDAG
DVDDLLDMM
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcaggatcgaaatcggctctggtgctgtgcatggacgtgggcttctccacgtccaac
tctgccccgggtgaagcgactccctttgaactggccaaaaaaattgtccagaagtttgtc
cagcgtcaggtttttgctgagactaaggatgaagtggctttagtcctgtttggcacagat
tccacccaaaaccctctgcaccaggacgaccagtaccagcacatcaccatctaccgccac
ctcatggtagccggttttgaactactggaggaaattgagaaacaggtcattccagagagt
cagcatgcggattggcttgatgctcttgttgtctgcatggatctccttcagacagaaact
gatgggaagaagtttgatcgtctcaacatcgtcttcctgactgacctcaactcccaagcc
agtgcagacaacgtggatgcaattatagaaaatctgaaaaaagctggcatcactttacag
ttctttctgcctttccctgtgaaggaccatgacaaggagggaggtggaggagtggatgag
gacagcacaggtcctggtcacccaggtactggcaaaggtctgtccagggaacagaagaat
agccttgacataatgaaacacatcatgttgaatctggatgaagatgagggcctggaggaa
gtttatacattcaggaatgcaatcgagcagctgtctatgttcaagcgtatcgagaggaga
ccaatggcctggccctgtcagctgacaatcggcagctccctgtcgatccgtattgtagga
tacaaagcagtgacagaagagaagctgaagaagatatggtttacagttgatgctcaaacc
aaccagaaagatgacgtgaagcgagagactgtctactgtctggatgatgacaacgagact
gaggtgcaaaaggatgacaccattcaaggttttcgttatggaagtgacattgttcccttc
tccaaagtggatcaagaccagatgaagtacaagcatgatgggaaatgctttgctgttcta
ggcttcgccaagcagagcatggtacgtcatcatcagttcatgggaaatcaggtcctcaag
atttttgctggcagggatgatgagcatgcaggagtggcgctgtcggccgtcatccgggcg
ctggatgaactcaaaatggtggccattgtgcgttatgcctatgaccgtcgctgcaaccct
caaatcggggcagcgttcccttatattaagcaggactatcagtgtctgatgtacttccag
atgcccttcgcagaagacctcagacagtttacattcccttcacttgaaaacaacaaaaag
ttcacaccgtcagacactcagctgtcggctgtggactctctcattgactccatgatgttg
gttgaggaggacaagaatggagagaaaaaggacctgttcaagccccaccacattcccaac
cctgcattccagaggcacttccagtgcctgcatcaccgaggagtaagccctggtacccct
cttcctccaatagagccgtggttgaaggctgctctcgagctccctgaggtcatcagcgaa
cgctgccaagttccactggaggagatgaagaagaagtttcctctcacagaagtggagaag
aaaaagaagctgaagacaagtgctcagatttttggcaaagatgcagatgagctggacgcc
aagaaagtgaaaggagacgaagaagaggaggaggagtataatctggcggacattgctgaa
ggctctgttacttctgtgggaagtgttgatccagcccgagacttctgcactctgatcaag
aagaagagtcttccattcggagaggtctgtcaacaactgactcacaggatagagcagttg
cttagcaacaagaacacacaatactacatgaaaagcatctcctgtatccaggcttttaga
gagcagtctgttaagcttggaaatgctgatctgtacaatagctacctccaatccttgaaa
aggagcattccaaacagagggctcgaggtcttctgggacctgcttgttcaagatgcctta
actctgatcagcaaggacgaggttgaaggaagcactgtgtccaaaagcgaggcgaatcag
tttctggttgcagaggaaaagaaagaggagacggctgcaccaccagctgaagacgcagga
gatgttgatgacttgctggacatgatgtaa
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