Hippoglossus hippoglossus (Atlantic halibut): 117755520
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Entry
117755520 CDS
T07778
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117755520 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117755520 (si:ch211-266g18.9)
Membrane trafficking [BR:
hhip04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117755520 (si:ch211-266g18.9)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
TPR_Vps41
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
117755520
NCBI-ProteinID:
XP_034431271
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Position
22:7969817..7976901
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AA seq
835 aa
AA seq
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MAFKAFTKTQIYEKPEAPKEKDKFGIQCLECFDRNLYIGSKNATVQHLILPSSANGDLSP
GQSKTREGRARKLGSSNPVVQLRAVPLFNHLLVLWDRGVTALNMFSLEPVPALKKIQHVS
LFEVCDSLLAARAGCVQMVTSSSRRRVIRIHVVGVDRWEVVKEVSLQQDPVALAVDGTSL
CVATCDRYLLCDVETGSSEELFPHNHKKQLVIVTSVGRGEFLLNGPESLGMFVMKTGICQ
RPPLQWPQEVLAATVCFPYILTLQPQVLSVYSMLDQRCKQTVSLHGGKGLLSTSDGVLVF
TERDIFSLRLVPLEEQIQALVGHERVEEALLLLDGVQSRRPLDSYKELQKAVTCLAGFVH
FYQEGFSEARELFIAGELDPRELILLFPDMRSCLSNDFQSQFDQGTKKGRALQVLWREDT
NMFHHYLSFLADFLRAVRGTERDSACRAEVDCALLRLYVGLGDTENLQQLVTSPNECRLD
HCVPALEKNNRFFALGCLYQSQGRQTDAIKTWVNIADGSHEDDSCSDVYGHIVWTLSQLD
DRDIVRNFADWTLRKNQEKGVQIFTNRPPDDRLETQDVFVLLEKYPLASVLYLEFLIHDL
SSEEERHHSRLALAYVTQTLREEEEAGLRSTRGKLQHLLWESKFYDVSTVYERVKSTTLH
VETAILLGRSGEHSRALQVLVHRERDPQAAEAYCCRAAQGHDAPFRQALLLTLLQIYLSS
EDPTSTAVDLLNDNPWAFAAEEVVQLLPDSWSVQLVSQFLVGSVRATLHQSRVVKLQEAL
ARVELMRHKVTWMQASKAMFRLEKEQKCKVCQRVLAEPHFACNLHGELMHVGCTL
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaagcattcacaaaaacacagatctatgaaaaacccgaagctccaaaagaa
aaggacaaattcggcatccagtgcctcgagtgcttcgatcgaaatctgtatattgggagt
aaaaatgcaacagtgcagcacctcatcctaccaagcagcgccaacggagacctgagtcct
ggtcagagcaaaaccagagaaggtagagccagaaaactcggctccagcaacccagtcgtc
caactgagagcggtcccgcttttcaaccacctgcttgtcctgtgggaccgcggcgtcacg
gccctcaacatgttctccttggagccggttcctgctttgaagaaaatccagcacgtgtct
ctgtttgaggtgtgcgactcattgctcgcagctcgggccggatgcgtgcagatggtgact
tcctccagccgcaggagagtgatccgcatccacgtggtgggagtggacaggtgggaggtt
gtcaaggaagtgtctctccaacaggatcccgtggccttggcagtagatggcaccagtctg
tgtgtagccacctgcgacaggtacctcctctgcgatgtggagactgggagcagcgaggag
ctttttcctcacaatcacaaaaagcagctcgtcattgttacctcagtgggacgaggggaa
ttcctcctgaatgggcctgaatctttgggcatgttcgtgatgaagacggggatttgccag
cgccctcccctgcagtggcctcaggaggtgctggcagccacagtatgtttcccttacatc
ctcaccctgcagccccaagtgctgtctgtctacagcatgttagatcagcggtgcaagcag
actgtgagcctccatggagggaagggtctgctctccacatcagatggcgtgttggtgttc
acggagagagacattttcagcctgcgtctggtgccgttggaagagcagatccaggcgctc
gtaggacacgagagggtcgaggaggctttactgctgctggacggggttcagagccgtcgt
ccacttgactcatacaaggagctgcagaaggccgtcacttgcctggctggatttgttcat
ttttaccaggagggtttttcggaggccagagaactattcattgcaggcgagttggacccc
agagaactcatcctcctcttcccagacatgaggtcgtgtctcagcaacgactttcagtcc
cagtttgatcaggggaccaagaagggcagggctcttcaggtgctctggcgagaggacaca
aacatgtttcatcactacctgtccttcctggcagactttctaagagctgtcagggggact
gagcgagactcagcgtgcagggcggaggtggactgcgccctcctgaggctgtacgtggga
ctgggagacactgagaacctgcagcagctcgtcacttctcctaatgagtgcaggctggat
cactgtgttcctgctctggagaaaaacaacagattttttgccttaggttgcctctatcaa
agccaagggaggcaaactgatgcaataaagacttgggtaaatattgcagacggctcccac
gaagacgactcttgctcagatgtgtatggacacatagtgtggactctcagtcagctggac
gacagagatatcgtgaggaactttgcagattggactctgcgaaaaaaccaagagaaaggt
gtgcagattttcaccaaccgccctccagatgatcgactggagacacaggacgtcttcgtt
ctcttggagaaatatccgctggcgtcggttttgtatcttgagttcttgatccatgatttg
agcagcgaggaggaaagacatcacagccgtctggccttggcatatgttactcagacgctg
cgagaggaagaggaagcaggtttgaggtcgaccagggggaagctgcaacatctgttatgg
gaatccaaattctacgacgtctccactgtatacgagagagtcaagtcaacgaccctgcac
gtagagacagccattctcctcggcaggagcggggaacactcccgggccctgcaggtgctt
gttcaccgggagcgagacccccaggctgcagaggcctactgctgcagggctgcccagggc
cacgacgctcccttcagacaggccctgctgctcaccctgctccaaatctacctgagctcc
gaggatcccaccagcactgcggtggatctgctgaacgacaacccttgggcctttgcagcg
gaggaggtcgtccagctcctgcccgactcctggtctgttcagctcgtctcccagttctta
gtcggatccgtgagggcaacgctccaccagagtcgcgtagtgaagctgcaagaggcgctg
gcccgggtggagctcatgcggcacaaggtcacttggatgcaggcctcaaaagcaatgttc
agactggagaaggagcagaagtgtaaggtttgtcagcgagtccttgccgagccacacttt
gcctgtaacctgcacggcgagctgatgcacgtgggctgcacattatga
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