Hippoglossus hippoglossus (Atlantic halibut): 117756970
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Entry
117756970 CDS
T07778
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117756970
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117756970
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Lipase_GDSL
DUF3887
Motif
Other DBs
NCBI-GeneID:
117756970
NCBI-ProteinID:
XP_034433503
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All DBs
Position
23:16712022..16732147
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AA seq
1780 aa
AA seq
DB search
MPLTLLIITALVLLCPVRTQVPEFADVCTEGSCYPATGDLLIGRAHKLTATSTCGLKQPE
RFCIVGHLEEEKKCFVCDSSKTFDEETNSVSHAVENVVTTFAHNRLKTWWQSESGVENVT
IQLDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGKTWQVYRYFAYDCESSFPGVSAGPM
VKVDDIICDSHYSDIEPSTEGEVIIRVLDPAFEIEDPYSVRIQNMLKITNLQVKFIKLHT
LGDNLLDSRDEVTEKYYYALYDLVVRGNCFCYGHASECAPMDGAPRRAEGMVHGRCVCNH
NTEGLNCERCTDFYNDLPWRPAEGRNTHACKKCECNRHSTSCHFDLAVFMTTGNASGGVC
DDCRHNTVGRQCEQCAPFFYQHPERDLRDPHVCEQCNCDPTGSLEGGLCDPRTDVAARLI
SGQCRCKGHVEGERCDHCRQGHYGLGQGPQGCLPCACNPLGTLPGGNPCESHSGKCFCKR
LVDGHNCDQCMPQQWGLSNDMDGCRSCDCDQGGAVDNNCDPHSGQCVCREHMFGRRCDQV
ESGFYFITLDHYTYEAEDAKHGPGVTVVQRPYPLDRSPTWTGMGFVNVPEGAYLEFNINN
IPDSMDYDILIRYEPQLPEQWEQVNIRVQRPVFNPPNYISQCGNSIQAGDQQAISLPPGS
RHVLLVRPVCFERGMNYTIRLSLPLYSSVSDVQSPYTLIDSLVLIPRVRELDMFHGIDGV
GAWDTFQRYRCLESSQSVVKSPMTDICSDYIFSVSALLHNGAMACQCDAQGSLSAVCESS
GGQCRCRPNVVGRNCDHCAPATFLFSPAGCRPCDCDPRGSVNAFCHEATGQCECVPGATG
RQCSHCLPGFWGFPQCRPCHCNGHSEYCHLQTGECQGCRDFTSGHLCERCLDGYHGNPEL
GSGGHCRPCMCPDGPRSGRQFADKCYLLSYTNQLVCVCSPGYKGSRCDECSPGYFGNPLV
PGGGCMPCQCNNNIDMHDPGSCDTRTGACLKCLHHTDGYGCKRCKLGYYGDAATQSCRKC
MCYSVGTLPPACSSPGECQCDQHTGQCPCQPNVVGQNCDRCAVDTWNITRGTGCERCDCD
PAHSFGSSCNEVTGQCSCKPGFGGSTCRECRELFWGNPEVKCHACDCEPRGISSEQCHRA
TGQCTCVEGVSGPRCDECARGSTGEFPECEPCHQCFATWDTVVGELTNQTRRLEDQVTEL
QTSGVTEPYKELIGSLERNSKAVREIVESNPAAVKLEQTQDLMHHITGLMSYLNGKLNTT
EETLNLLHNDANSTDVNLDALTEEANQLELSVQDLRQQVYDAKNANLQGAMDTITEAHTQ
STMAERRANTSTSDPGNTVEESAVVRKATEDKLSSGQKEFDRKHQRNSQKLEKLSKELEK
FDLSPLSEKTCGGAADDDGCSGSSCGGLGCVGEDGAPQCGGEGCEGIVTTSQTALKSAKD
LDRDILAAMQEVDKLSRLVWEANIRANEAKGNAMEVLIKSNRSKERVEQSNEQLRNLIKE
IRDLLTNEKADVSVIEMVANEVMALKMPTSTEKLHELTNEIREKVGTLTSVESILTQSAE
DIQVAENLLKQAKAASEEASNMKETADVVKAALDESERAQGIAMDAIQLAQNNTKGTLDL
LISVESETASTELKLSNTTGRLVQLEREVGLLRQNNLEVNRLSETAERVGDQARQEADEA
QKEFDSEVKDKLEKVEDLVEDKGETVLQARRRADELQQEAKELLTQSSNQLQRLGELESS
YEENQRILEAKAAELVELEQIVRKVLEEISYKVTLYSTCL
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcaccctcctcatcatcacagctctggtcctgctgtgtcccgtcaggactcag
gtaccagagtttgcagatgtgtgcacggagggcagctgttacccggccaccggcgacctg
ctgatcggccgggcgcacaaactcaccgccacctccacctgcggcctgaagcagccggaa
cgcttctgcatcgtcggacatctggaggaggagaagaaatgtttcgtgtgcgactccagc
aagacgttcgacgaggagaccaactccgtcagccacgccgtcgagaacgtggtcaccacc
ttcgctcacaaccgcctcaaaacctggtggcagtcggagagcggtgtggagaacgtgacc
atccagctggacctggaggccgagttccacttcacacaccttatcatgaccttcaagacg
tttcgcccggctgccatggtgatcgagcgctcgatggacttcgggaagacgtggcaggtt
tatcgctatttcgcctacgactgcgagtcgtccttccccggtgtgtcggccgggcccatg
gtcaaagtggacgacatcatatgtgactcgcactactccgacatcgaaccatccacagag
ggagaggtgataatccgcgtgctggacccggccttcgagatcgaggacccgtacagcgtg
aggatacagaacatgctgaagatcacgaacctccaggtgaagttcatcaagctccacacg
ctgggcgacaacctgctcgactcccgcgacgaggtgacggagaagtactactacgccctc
tacgacctggtcgtccggggaaactgcttctgctacggtcacgcctccgagtgcgccccg
atggacggagcgccgaggagagccgagggcatggtgcacggtcgctgtgtgtgtaaccac
aacactgagggattgaactgtgaacgctgcacagacttttacaacgatttgccgtggaga
cctgcggagggacgcaacacacacgcctgcaagaagtgtgagtgtaaccgtcactccacc
tcgtgtcacttcgacctggccgtgttcatgacgaccggcaacgccagcggaggcgtgtgc
gacgactgccgacacaacacggtcggccggcagtgcgagcagtgtgcgccgttcttctac
cagcacccggagagagacctgagggacccccacgtctgtgaacagtgtaactgcgacccg
accgggtctctggagggcggactgtgtgacccgcgcaccgacgtggccgcccggctgatc
tcaggccagtgtcggtgcaaaggccacgtggagggcgagcgctgcgaccactgccgacag
ggacactacgggctgggccaggggcctcagggctgcctgccctgtgcctgtaacccgctg
ggcactctgccgggaggaaacccctgtgagtctcactcaggaaagtgcttctgcaaacgc
ctggtggacggacacaactgtgaccagtgtatgcctcagcagtggggtctgtccaacgac
atggacggctgcagatcatgtgactgtgaccagggcggagctgtggacaataactgtgac
cctcactcaggacagtgcgtgtgcagggagcacatgttcggacgccgctgcgatcaggtg
gagtccggcttctacttcatcactctcgatcactacacctacgaggccgaggacgccaag
cacggacccggggtgacggtggtccagagaccttaccctctggaccggagtcccacgtgg
accggtatgggatttgttaacgtgccagaaggagcctacttagagttcaacatcaacaac
atcccagattccatggactacgacatcctgattcgctatgaacctcagctgccagagcag
tgggagcaggtgaacatcagagtccagcgtcccgtcttcaaccctccgaactacatcagt
caatgtgggaactccatccaggctggagaccaacaggccatctctctccctcctggatcc
agacacgtgttgctggtcaggccggtttgtttcgagagaggaatgaactacacgatccgt
ctcagtctgccgctgtactcgtcagtcagcgacgtccagagcccgtacacactcatcgac
tccttggtgctgattccccgggtcagggagctggacatgttccacggcatcgacggcgtg
ggagcgtgggatacgttccagcgctaccgatgtctggagagcagccagagcgtcgtgaag
agcccgatgaccgacatctgcagcgactacatcttcagcgtctctgctctgctgcacaac
ggagccatggcatgccagtgtgacgctcagggttcgctcagtgctgtgtgcgagtccagc
ggaggtcagtgtcgctgtcgacccaacgtcgtcggcaggaactgtgaccactgtgccccg
gccacgttcctgttcagccccgccggctgcagaccttgcgactgcgaccctcggggctcg
gtcaacgccttctgccacgaggccaccggccagtgcgagtgcgtccccggggccacgggt
cgccagtgttcccactgcctgccgggcttctggggcttcccccagtgccgaccctgccac
tgtaacggccacagcgagtactgccacctgcagaccggggagtgccagggctgcagagac
ttcaccagcggacacctctgcgagaggtgcctggacggttaccacgggaaccccgagctg
ggctcagggggccactgtcgcccctgtatgtgccctgacggcccccgcagcggacgccag
tttgcagacaaatgttacctcctgtcctacaccaaccagctggtgtgtgtgtgcagcccc
ggatacaaaggctccagatgtgacgagtgctcccccggttacttcgggaaccccctggtg
cccggcgggggctgcatgccctgccagtgcaacaacaacatcgacatgcacgacccgggg
tcctgcgacacccggacgggggcctgcctcaaatgcctgcaccacaccgacggctacgga
tgcaagcgctgcaaactgggttactacggcgacgctgccacgcagagctgcaggaagtgc
atgtgctacagcgtgggaacgctacctccggcctgttcgtcccctggcgagtgtcagtgt
gatcagcacaccggtcagtgtccctgccagcccaacgtggttggtcagaactgcgaccgc
tgtgccgtggacacgtggaacatcaccagagggacgggctgcgagcgctgcgactgcgac
cccgcccactccttcggctcctcctgcaatgaggtcacgggacagtgctcgtgcaaacct
ggttttggcggcagcacgtgtcgggagtgcagggagctgttctgggggaatccagaggtt
aaatgtcacgcctgtgactgtgaacctcggggaatctccagtgaacagtgtcaccgcgcc
accggccagtgcacctgcgtcgagggcgtctccggcccgcgctgcgacgagtgcgcccga
ggctccacgggcgagttccccgaatgtgaaccctgccaccagtgcttcgccacctgggac
accgtggtcggcgagctgaccaatcagacccgacgtctggaggaccaggtgacggagctg
cagaccagcggggtgacggagccgtacaaagagttgatcggcagcctggagagaaactcc
aaggccgtgagagagatagtggagagcaaccctgcagccgtgaagctggagcagacccag
gatctcatgcaccacatcaccggtttgatgtcctacctgaacggaaagctcaacaccacg
gaggagaccttgaaccttctccacaatgacgccaactccaccgacgtaaacttggacgca
ctgacggaggaggccaaccagctggagctgagcgtccaggacctgaggcagcaggtgtac
gacgccaagaacgccaacctccagggtgccatggacaccatcacagaagctcacacgcag
tctacgatggcggagcgccgcgccaacacctccaccagcgaccctgggaacacggtggaa
gagtccgccgtggtacggaaagccacagaggacaaactgagcagcggccagaaggagttt
gaccgcaagcaccaaagaaactcgcagaagctggagaaactgtccaaggagctggagaaa
tttgacctgtcaccacttagtgagaagacgtgtggaggtgcagctgatgatgacggctgc
tctggctcctcctgcggcgggttgggttgcgtcggcgaggacggagctcctcagtgcgga
ggagaaggatgtgaaggcatcgtcacaacctcccaaactgctctcaaatcagccaaggac
ctggaccgggatatcttagcagctatgcaggaggtggacaagctctccaggctggtgtgg
gaagcaaacatccgggcaaatgaggccaaggggaacgcgatggaggtgctgatcaaatcc
aaccggagcaaggagcgggtggagcagagcaacgagcagctccgcaacctcatcaaagag
atacgagacctcctcaccaatgagaaggcagatgtttcggtgatcgagatggtggccaac
gaggtgatggctctgaagatgccgacctcgacggagaagctgcacgagctgacgaatgag
atcagggagaaggtcggcaccctgaccagcgtggagagcatcctgactcagagcgctgag
gacatccaggtcgcagagaacctgctgaagcaggccaaggccgccagtgaagaggcgtcc
aacatgaaggagacggcagatgtagtgaaggcggcgctggacgagtccgagcgcgctcag
ggcatcgccatggacgccatccagctggcccagaacaacactaaaggaaccctggacctg
ctgatctctgtggagtcggagacagcctcgacggagctgaagctcagtaacaccaccgga
cgcctggttcagctggagagggaggtcggcctgctgagacaaaacaacctggaagtgaac
cggctgtcggagacggccgaaagggtcggagaccaggccagacaggaagcagacgaggcc
cagaaggagttcgactcggaggtgaaagataagctggagaaggtggaggacctggtggag
gacaaaggggagacggtgctgcaggcgaggaggcgagcagacgagctgcagcaggaggcc
aaagagctgctcactcagagcagcaaccagctgcagagactcggagagttggaaagttcc
tacgaggaaaaccagcgcatcctggaggccaaagccgcggagctggtggagctggagcaa
atcgtccgcaaggtcctggaggagatcagctacaaagtgactctgtacagcacctgcctg
tga
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