Hippoglossus hippoglossus (Atlantic halibut): 117756982
Help
Entry
117756982 CDS
T07778
Symbol
pcdh17
Name
(RefSeq) protocadherin-17 isoform X1
KO
K16499
protocadherin delta 2
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hhip04515
]
117756982 (pcdh17)
Cell adhesion molecules [BR:
hhip04515
]
Cadherins
Protocadherins
117756982 (pcdh17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
117756982
NCBI-ProteinID:
XP_034433529
LinkDB
All DBs
Position
3:complement(9778401..9835795)
Genome browser
AA seq
1141 aa
AA seq
DB search
MYLSIFFFLLLWAQALTLKNLNYSVPEEQGPGTVIGNIAKDARLGLDQTGPGGQGKKANF
RVLENSAPHLIDVDPQSGLLYTKQRIDRETLCKRNPKCQLSMEVFANDKEICMIKVDIQD
INDNSPNFPSDQIDIDISENAVPGTRFPLTSAHDPDAGENGLKTYQITRDDYNLFSLEVK
ARGDGTKFPELVIQRPLDREERSHHTLILSATDGGEYPRSGTMQINVKVIDSNDNSPVFD
QPTYVVEIPENSPPGKVLIDLNATDPDEGNNGQVVYSFSGYAPERIRELFSIDSRTGVIK
IQGEIDYEESPVIEIDIQAKDLGPNPIPGHCKVTVKVLDRNDNWPSIGFVSVRQGAISEA
APPATVIALVRVTDKDSGRNGQLQCRVLGNVPFKLEENYDNFYTVVTDRPLDREVQDEYN
VTIVAKDNGLPPLNSTRSFTVKILDENDNVPRFTKSVYLLQIPENNIPGEYLGSVLAHDP
DLGQNGTVYYSILNSNVSGGDVNTYVNVNAANGAIYAVRSFNYEQIKYFDFKVLARDAGS
PHLESNATVRISVLDVNDNIPVIVLPLLLNDTAEIHVPRNVGVGYIVTTVRAVDNDYGES
GRLTYEISDGNEEHLFEIDPVTGEVRTAHPFWDDVSPIVELIIRVSDHGKPTLTAAARLI
VKASNGRPPDGLPRTKDNQNWDMSLPLIVTLSIVSIMLLAAMVTIAIKCKRENKEIRTYN
CRIAEYSHPQLGKGKKKKINKNDIMLVQSEVEERDAMNVMNVVSSPSLATSPMYFDYQTR
LPLSSPRSEVMYLKPTANNLSVPQGHVGCHTSFTGPVTSTTDTPTNRMSIIQTDNFPTEP
NYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKLKAT
GVKPPPLEQDEDCVNCTEECRVLGHSDRCWMPQFPTGGNQAEGIDYRNNMFVPAGMETVP
ETETYETVNPNGKKTFCTFGKERRDHTILVANVKPYLKAKRALSPLLQEVPSASNSPTKG
CSTNSPCSSIKSPADGAEGKPPPASCSGHYGPPDGQYLSPTKQTRDQGVYPPLPPSDPVA
KVLAEARSRISQEAAGEMECPMEQMEPDVNRDGMDADQVVRDIDKLLQDCRGSEATGTLR
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttctattttctttttcctcctgttatgggctcaagccctgacattgaaaaac
ttgaattactctgtcccagaggaacagggtccggggacagtgattgggaacattgccaaa
gatgccagactcggactcgatcagactggaccgggaggacagggtaaaaaagccaacttt
cgggtgctggagaattcagccccgcatctcattgacgtggacccccaaagtggactgctg
tacacaaagcagcgcatcgacagggaaacattgtgtaagagaaaccccaagtgccagcta
tcaatggaggtttttgccaatgacaaagagatctgcatgatcaaagtagatattcaggac
attaatgacaactcacccaatttcccctccgatcagattgatattgacatttcagaaaat
gctgtgccagggacacgctttcccctgaccagcgcgcatgatccagatgcaggagaaaat
ggcctgaaaacctatcaaataacccgtgatgactacaatctcttttccttggaggtaaaa
gcccgcggggatgggacaaaattcccagaattagttattcaacgaccattggacagagaa
gaacgaagccatcacaccctaattttgtcagccaccgatgggggggaatatcctagatca
ggtaccatgcagataaatgttaaagtaattgattcaaatgataacagccccgtgtttgat
cagcccacatatgtcgtggaaattcctgaaaattcacctcctggtaaagtcctaatcgat
ttaaatgccacggatcctgatgagggcaacaacggacaagtagtctattcttttagtggc
tatgccccagagagaatccgggagctcttctccatagattccagaacaggggtcataaag
attcagggtgaaattgactacgaagagagcccagttatcgagattgacattcaggctaag
gatctcggtcccaatccaatcccgggccattgtaaagtcactgttaaagtgctggacagg
aatgataactggccatctataggctttgtgtctgtgagacagggagccatcagcgaggca
gcacctccagccactgtcattgcgctggtccgtgtcacagacaaggactcgggcaggaat
gggcagcttcaatgcagagtgctgggtaatgtcccttttaaactcgaggagaactatgat
aacttctatacagtggtgacagacaggcccttggacagagaggtgcaggatgagtacaat
gtcaccattgttgccaaagacaatggcctccctcctttaaactctacaagatccttcact
gtgaagattctggatgagaacgacaatgtccctcgcttcaccaaatcagtgtaccttctt
cagattcctgagaacaacatccctggggagtacctgggctcagttctggcacacgaccca
gaccttggccagaatggcaccgtgtactacagcatactcaactccaatgtgagtgggggt
gatgtcaacacgtatgttaatgttaatgctgcaaatggagccatctatgctgtgagatct
tttaactacgagcagatcaagtattttgactttaaggttcttgctagagatgcaggatct
ccgcatctggagagtaacgcaacggtgcgcatcagcgttctggatgtcaatgacaacatc
cctgtcatagtcctgccgttactcctgaacgacacagctgaaatccacgtgccacgtaat
gttggtgttggctacatagtcaccacagtgagggcagtggataatgactatggcgagagc
gggaggctcacctatgagatctcagatggcaacgaggagcacctctttgagattgatcca
gtgactggggaggtgcgaacagcccacccattttgggatgatgtcagccccattgtggag
ctgatcatccgagtatcagaccacggcaagccaactctcactgctgccgccagactcatc
gtcaaggcctccaacggacgtcctcctgatggactgcctcgcacaaaggacaatcagaac
tgggacatgtctctgcctcttatagtaactctaagtattgtatccatcatgcttctggct
gccatggtgaccatagctatcaagtgcaagcgggaaaacaaggagatccgtacctataat
tgtcgcattgcagaatactcgcaccctcaactcggaaaaggcaagaagaagaagataaac
aagaacgacatcatgctggtgcagagcgaggtggaagagcgggatgccatgaatgtgatg
aatgtggtaagcagcccttccttggccacctcacccatgtactttgactaccagacacgc
ctgccactcagctcaccacggtcagaggtcatgtacctcaagcccactgccaataacctc
agcgtgccccaaggccacgtgggatgccacaccagcttcacaggcccagtcaccagcact
acagacacacctactaaccgcatgtccatcatacagacggacaatttccccactgagcct
aattacatgggcagcagacaacagtttgttcaaagtagttcaacattcaaagacccagag
cgagcgagcctcagagacagcggccacggtgacagcgaccaggctgacagcgaccaggac
accaataagggctcctgctgtgacatgtctgcaaaagaagccctcaagttgaaggctact
ggcgtgaaaccgccgcctttggaacaagatgaggattgtgtgaattgtacggaggagtgc
cgggtactgggtcactctgaccgctgctggatgccccagttccctacaggaggaaaccag
gccgagggcattgactaccgcaacaatatgtttgtgccagcggggatggagactgttccc
gagacagaaacctatgagactgtcaaccccaacggcaagaagacattctgtacatttgga
aaagagagacgtgaccacactattctggtcgccaatgtcaagccctacttgaaggcgaaa
cgggccctcagcccactgctccaagaggtaccctcagcctccaacagtcctacaaagggc
tgctccaccaattctccttgttcctcaatcaaaagcccagctgacggagctgaaggtaaa
cctcctcctgcctcatgctccggccactacgggcctcctgatggtcagtacctgtcccca
accaaacaaaccagagaccagggggtctacccacccttgccgccctcagacccagtggcc
aaggtgctcgccgaggcacgctccaggatcagccaagaggctgcaggggaaatggagtgt
cccatggagcagatggagcctgacgtaaatcgtgacggaatggatgctgaccaggtggtg
agagacatcgacaagctattgcaggactgcagaggaagtgaggccactggcacactcagg
aagtga
DBGET
integrated database retrieval system
