Hippoglossus hippoglossus (Atlantic halibut): 117757028
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Entry
117757028 CDS
T07778
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117757028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117757028
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117757028
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117757028
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
117757028
NCBI-ProteinID:
XP_034433640
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All DBs
Position
23:complement(17670427..17677366)
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AA seq
541 aa
AA seq
DB search
MFGANRKKFMEGGVENDYADDSSLYYSQQSMFPPHRPDKDMLVSSSASSTGQLSQLGASL
YGPQSALGFPMRGMNSSAAPQLSRSGLNQSASQLSSHASTPNTGTMHTPPSPSRGILPMS
TRSVLNHSQQVGGPTGQAGGMGGGGGDRGGGGGGGRSGSMGSPSRSSPSIIGMPKQQQAR
QPFTINSMSGFGVNRNPGFNLNNSLSNNIFNGTDGSENVTGLDLSDFPVLAERSRRDGGS
NPTPLLNPLAGRAPYGGIGMVTKPSSEQSQDFSIHNEDFPALPGPNYQTKDPTSTNEDSK
TNLNSSGKSTSNSDGPKFPGDKSSAPSNNNQQKKGIQVLPDGRVTNIPVGMVTDQFGMIG
LLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPS
EYLTNIHIRDKLAAIKLSRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWI
TRAPGMEPTLKTNAYERGTYYFFDCINWRKVAKEFHLEYDKLEERPHVPSTFNYNPAQQA
F
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctaaccggaagaagtttatggaggggggggtggagaacgactacgcggac
gactcaagcctctactacagccagcagtccatgttccctcctcaccgcccggataaagat
atgttggtgtcttcctctgcttcctctacgggtcaactgtcacagctgggagccagttta
tatggtccgcagagtgcgttggggtttcccatgcgtggtatgaacagcagcgcagcacct
cagttaagtcgaagtggtctgaaccagtctgccagccagctctccagtcatgccagtaca
cccaacactggaacaatgcacacgcctccatcaccgagcagggggatcctgcccatgagc
acccggagtgtcctgaaccacagccagcaggtggggggtcccacgggtcaagcgggaggg
atgggtggcggcggcggcgacaggggaggtggcggcggaggagggaggagcggcagcatg
gggagtcccagccggtcgtcgcccagcatcatcgggatgcccaaacagcagcaagcacgg
cagcctttcactattaacagtatgtcagggtttggggtgaacaggaatcccggcttcaac
ctaaacaactcattatccaacaacatcttcaatggaacagacggcagtgagaatgtgacg
gggctggacctgtcagatttcccggtgttagcagagaggagtcggagggacggaggttcg
aatcccaccccgctgctcaacccgctggccggtcgggcgccttacggtgggattggcatg
gtaaccaagccgtccagtgagcagtcgcaagacttttccatccataacgaagatttccca
gctctccctggtcccaactaccaaacaaaagaccccaccagcaccaacgaagacagcaaa
acgaatctgaactcgtcaggaaagtccacctctaactcagatggtccaaagttccccggc
gacaagagctctgcacctagcaacaacaaccagcagaagaaagggattcaggttcttcct
gacgggcgcgtgaccaacatcccggtcggcatggtaacggaccagtttggaatgattggc
ttgctgacgttcatccgggcggcggagacggaccctggcatggtccacctggcgctgggc
tcagacctcaccacgctgggcctcaacctcaactcacccgagaatctctaccccaagttt
gcgtctccctgggcgtcggctccatgtcgaccgcaggatatagacttccacgtcccgtca
gagtatttaaccaacatccacatacgggacaagttagcagctatcaagttgtctcgatat
ggtgaagatctgctgttttatctctactatatgaacggtggagacctactacaactgctg
gctgcagtagaactctttaacagggactggcggtatcacaaagaagagcgggtttggatc
actcgggctccggggatggagcccacgctgaagaccaacgcctacgagagagggacctac
tacttcttcgactgcatcaactggagaaaagtggccaaggagtttcatctggagtacgac
aaactagaagaacgacctcacgttccctccaccttcaactacaatcctgcccagcaggcc
ttctga
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