Hippoglossus hippoglossus (Atlantic halibut): 117757233
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Entry
117757233 CDS
T07778
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117757233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117757233
03036 Chromosome and associated proteins [BR:
hhip03036
]
117757233
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117757233
Coactivators
SAGA/TFTC/STAGA complex
117757233
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117757233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
117757233
NCBI-ProteinID:
XP_034434074
LinkDB
All DBs
Position
3:23770917..23861510
Genome browser
AA seq
1082 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLTGQTNPAAKTDENGGAGSETPANHLLGK
PLPAPVGTTTLEQQQQGRRNKPEMRPEINSKDASPDKSVTAASLGCSPSVRESATTNSSA
ASVSAAGSSGSQSHGASITTLTAPGVSTLASPPASISTTPATSRGCKGSPGTGEPSTEAS
PARKRFTTPRRSAAARIKSFNGAAVTTRRNSNTVGGDTVSPVDSSPPNPSTRPLTAAINT
STFTVSNASLPEGQSAIALDRGTPTIALHRLPSHIVASIAQNGNGTSVSALVQQGTRTGA
ATCSAAQENHSKTITDTGASKADDCQSKIVMSSQPVSVNSVINSVPSAPSVVTPTTTTTT
TTTTAADTTTTTVTPPLSSATAPACVTGVATSSACGTGQTTSVTTTTTTVCMVRPTAPSP
APAVATPAQFQPRPGLTAPQRIVAPQLIVRPPQQQTTIQLPPGFTIPPGMVLVRTELGQL
VMVPQQALAQAQAQAQAQAQNNISPRPATPTTGTSFRVTTPQSPVTSQTARQCPVTVTKM
APSPSPTPSSPALQTSSSSSSSSSCPALRPKGPVAPAIAVTAPQQTPVVMAPQAPAQAAS
QPVQPPQTGIAAPPGASIVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQD
LLDAKIEPEEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLSSQQSLTQPLQQGVKPA
PCGVPPAIVSGPAVRIRHPNSVSTTTGASALPAGTLGHAAAMGIKTAGAVGGQVRMPVVI
TQSVRAQGTMGKGVVNQAGKSPMGLAVQISGNQKNKLNDPGGGSFRDDDDINDVASMAGV
NLNEESARILATNSELVGTHIRSCKDEAFLHPGLLHRRILETAKKFGVTEVPMEAVTFIS
HATQSRLRTVVEKVSTIAQHRLDSCKDECYEQSADVRSQLRFFEQLERIEKQRKDEQERE
ILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQIRQRDANLTALAAIGPRKKRKVDSPG
ATPSGTEVSGSTAGSPASSSVPSTSSRQRQRITRVNLRDIIFYMEQERETAHSLLLYRAL
LK
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctcttttcagaggtggacgagaaagct
gtgagcgacctggtgggctcgctggagtcgcagctcaccggccaaacgaaccccgcggcc
aagacggacgagaacggaggcgctggctccgagacccccgctaaccatctcttaggaaaa
ccgctaccagctccagtgggcaccacaacactggaacaacaacaacaaggacggcgtaat
aaacccgagatgcgcccggagatcaactccaaagacgcgagtccggataaaagtgtcaca
gccgcttctctgggctgctccccgtctgtccgcgagtccgccaccaccaactcctcggct
gccagtgtgagcgcagcgggcagcagcggctcgcaatcacatggagcatccatcacaaca
ctgacggctcctggcgtgtcaactttggcgtctccgcccgccagcatcagcaccaccccc
gccaccagccgcggctgcaagggctccccgggcacaggtgagccgtccacggaagccagc
ccggcgagaaaacgcttcaccacgccgcggaggagcgccgcggctcggataaagagtttc
aacggcgccgctgtgacgacgcggaggaacagcaacacggtgggtggagacaccgtcagc
ccggtggattcaagtccaccgaacccctccactcggccgctgacagccgctatcaacact
tccactttcacggtgtctaacgccagcctgcccgagggtcagtccgctatagccctggac
cgggggacgcccaccatcgccctgcacagactccccagtcacatcgtggccagtatcgcc
cagaacggaaacgggaccagcgtctctgccttggtccagcagggcacccgcacaggagcc
gccacctgctcagctgcacaggagaaccacagcaaaacgatcacagacactggggcttcc
aaagcagacgattgtcagtccaaaattgtaatgtcaagccagcctgtcagtgtgaactct
gtaataaactccgttccctctgcaccttctgttgtcacgccaacaacaacaacaaccacc
accaccaccacagcagcagatacaacaaccacaacagtaacgccgcctctgagctctgcc
acggcccctgcttgtgtcacaggggtggcaaccagttctgcatgtggcactggtcagact
acatcagtgaccaccaccaccaccactgtttgcatggttagacccactgccccctcgcct
gcacccgctgtggccacccccgcacagtttcaaccccgtcctggactcacagcaccccag
aggattgtagccccccagctgattgtcagaccacctcagcagcagacgaccattcagctg
ccccccgggtttaccatcccaccgggaatggtgttggtgcgcacagagctgggccagctg
gtcatggttcctcagcaggctttggctcaagctcaggctcaagctcaggcccaggcccag
aacaacatctctcctcgacctgcgacccccaccacgggaacatccttcagagtcacgact
ccacagtctcctgtgacctctcagaccgccaggcagtgtcctgtgaccgtgaccaagatg
gcaccatctccctctcccactccctccagccctgccttacagacctcctcctcttcctct
tcttcctcctcttgtcctgcgctccgcccaaagggccccgtggcaccggccattgctgtg
acggctccgcagcagacccccgtggttatggccccccaggccccggcccaggctgcctct
cagccagtgcagcctccgcagacgggcatcgcagcgccccccggagcttctatcgtgtcc
caggaaatgcaagagaacgtaaagaagtgtaagaatttcctggccacactaatcaaactg
gcgtctcacaactctccgtcccctgagacttccaagaacgtcaagtctctggttcaggac
ctgctggacgctaagattgaaccagaagaattcaccagccggctgcagacagagctcaag
tcgtctccgcagccgtacctggtgccatttctaaagaagagcctcccggccttgaggctg
tctttgctgagtagtcagcagtccctgacccagcccttgcagcagggagtcaaaccagca
ccctgcggggtccctcctgccattgtgagtgggccagctgtccgcatacgccaccccaac
agcgtcagcaccaccacgggtgccagcgcgctgcccgccgggaccctcggacatgcagct
gccatgggaatcaagacagcgggcgctgtcggtggccaggtgcggatgcctgtggtgatc
acacagtctgtcagagcacaaggcacaatggggaagggagtcgtcaaccaagcggggaaa
agtcccatgggcttggccgttcagatctctgggaatcagaaaaacaagctcaacgacccc
ggaggaggctctttcagggatgatgatgacatcaatgacgtggcgtccatggccggggtg
aacctcaacgaggagagcgctagaatactcgccaccaactcagagttagtgggaactcac
atccgctcatgtaaagacgaggcctttctccacccgggactgctacaccgacgaatactg
gaaacagctaagaagttcggagtcacagaggtccccatggaggcagtgacattcatctcg
cacgccacacagtcgcgacttcgcaccgtggtagaaaaggtttcgacgatcgcacagcac
cggctggactcctgtaaggatgagtgctacgagcagtctgcagacgttcgctctcagctc
cgcttcttcgagcagctggagagaatcgagaagcagaggaaggacgagcaggaaagagag
atcctgttgaaagccgctaaaagtcgctccaggcaagaggacccagagcaagctcgactg
aaacagaaagctaaggagatgcaacaacaggagctggcgcagataaggcagcgagatgcc
aaccttacagcactagctgccatcggaccccgcaaaaaacgcaaagtggattcaccagga
gccacgccatcagggaccgaggtttcaggcagcacggcggggtccccagccagctcctcc
gtcccgtccacctcatcacgtcaacggcaacgcatcacccgcgtcaacctcagggacatc
attttctacatggagcaggagagagagaccgcccactccctcctcctttaccgtgctctg
ctcaagtag
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