Hippoglossus hippoglossus (Atlantic halibut): 117757443
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Entry
117757443 CDS
T07778
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhip03016
]
117757443 (rtcb)
Enzymes [BR:
hhip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117757443 (rtcb)
Transfer RNA biogenesis [BR:
hhip03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117757443 (rtcb)
Prokaryotic type
tRNA splicing ligases
117757443 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
117757443
NCBI-ProteinID:
XP_034434516
LinkDB
All DBs
Position
23:17896594..17900701
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKLSSNCWRIKKGFVPNMQVEGIFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMNNPDAVVSPGGVGFDI
NCGVRLLRTNLDEHDVQPVKEQLAQSLFNHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYCEIQVVDEIYDD
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIVVNDRQLACARIMS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSEVFSTTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaacgatgagctgcagttcctggacaaactgtccagtaactgctgg
aggatcaaaaaaggcttcgtgcccaacatgcaggtggaagggatcttctacgtcaacgat
cctctggagaagctgatgtttgaggagcttcgtaacgcctgtcgaggaggaggcttcggc
ggcttccttcctgccatgaagcaaattgggaacgtggcggcgctgcccgggatcatacac
aggtccatcgggctcccagacgtccactccgggtacgggtttgcgatcggaaacatggcg
gccttcgacatgaacaaccctgatgctgtggtgtctccaggtggcgtcggcttcgacata
aactgcggcgtccgtctcctgaggacgaacctggacgagcatgacgtgcagcccgtgaag
gagcagctcgctcagagtctgttcaaccacatcccggtcggagtcggatccaagggcgtc
atccccatgagcgccaaggacctggaggaggccctggagatgggggtggactggtctctg
agggagggctacgcctgggccgaggacaaggagcactgtgaggagtacggccggatgctg
caggccgaccccaacaaggtgtcgtcgaaggccaagaagagaggcctcccccagctggga
actctcggagcaggaaaccactactgtgagatccaggtggtggacgagatctacgacgac
tacgccgccaagaagatgggcatcgaccacaaaggccaggtgtgtgtgatgatccacagc
ggcagcagaggcctcggacaccaggtggccacagatgctctggttgccatggagaaggcg
atgaagagggataagatcgtggtgaatgaccgacagctggcgtgcgctcgcatcatgtca
caggaaggtcaggactacctgaagggcatggctgcggcgggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggcgttctctgaagtcttcagcacgacgccg
gacgacctggacatgcacgtcatctacgacgtctctcacaacatcgccaaggtggaggag
cacatggtggacgggagacagaaaacgctgcttgttcaccgcaaagggtccaccagagca
tttcctccgcaccacccgctcatccccgtcgactaccagctcacaggtcagccggtgctg
atcggagggacgatgggaacctgcagctacgtcctgacggggacggaaaaggggatgacg
gagacgttcggtaccacctgtcacggagcgggtcgcgctctctctcgggcgaagtcccgc
aggaacctggacttccaggacgtcctggacaagctcgccgacaagggcatcgccatccga
gtggcttcacccaaactggtcatggaggaggctcctgagtcgtacaagaacgtgacggac
gtggtgaacacgtgtcacgacgctgggatcagtaagaaggccatcaagctgcgaccgatc
gctgtgatcaaaggttga
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