Hippoglossus hippoglossus (Atlantic halibut): 117757613
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Entry
117757613 CDS
T07778
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hhip03009
]
117757613 (utp20)
Ribosome biogenesis [BR:
hhip03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117757613 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_GCN1
Cytomega_UL84
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
117757613
NCBI-ProteinID:
XP_034434782
LinkDB
All DBs
Position
23:complement(5936510..5958739)
Genome browser
AA seq
2848 aa
AA seq
DB search
MKIKSKSSYHKSENTFRFLTFAERLSNVNINVVHRIDRTGSYAEEVETYFSEGLTKWRDL
NLTEHFTTFSKEVSNNSQSFNMLVFHQKTIVESLKTHLAVKNSLAYQPLLDLVVQLARDL
QTDFYPHFPDFFVLITSLLDTKDTEVLEWAFTCLSYLYKYLWRVMVKDMTNIYSLYSTLL
SHKKEHIRKFAAESFSFLMRKVPDLDALLTHVFSDLQQHPDKAEGAGQLLFEMCKGVRHM
FHSAAANAFPVALRKLGPTTNPGVSLPWDTIRDALDHMAQVAADHVEREHFLVLWESLQV
SVVEVLGVVEAGGEEADQASDQLERLLFILHTLVSHRDGAKVTKPEAVCQTVLRLIQSSA
LSVPCSRLLLQIISSLLLGENISLPKSLIQETIQKVFGSTVGEDLILEFSKEMFTMKQFE
QLFLPCLLRFTAGLFSSGDALSRHCGLEVLVSLILAKAPPPTDGSMAFETYPLLFTGQST
GVLSSKEEGQESSTAPEQPTVPELVLSLIKFPEEQNQTIADLSLPWSALMLLPHIRPLSP
VTVVPAVSALLNHLLCQIDTEKMGKAGLFVARQALSCLLSLDGSAQLLSLVTVDKVTSIF
RRFPSDLSALLLGDLYYTRLSLSGVSEHLSHNALLEVFHILHANLSSNISKIRLLTLRIL
SQFEAELPPPPEGEEAVDVQPVFAVCLQAELVPASVQDYRDKLLHLRKLRHDLVQRSLPQ
GPAGSFQQVPLRYLIAMLFVNFRPLWDAVIELLVSHARGMDNKEFWVVYHEHLEMVAGMA
EKELRDCDEDDDVSDEEQESSSQSEPGCNVIESGDVGVLFLEELKLTSDPNDRTDFPNFR
SLLWRAMTQFPERVEPRSRELSPLLLRFIRNEFYPADLMVAPTQDLRKRNAAAQEDAEMA
VDEEEDEEQDVEEKGPKQKKARPRRAASKQLIIHLRVFAKFTNPRSLYLEASLGELYNQL
LCHQDQQIQGVALECVLTYKDPNIVPYKENLERLLQDKHFKEEIVHFNISEETGVVEASH
RVKLIPLLMRILFGRLRSKAGSKFQGKSSTASRSSIILRFLAGCQAEELGIFVDLLLEPV
CHHSQGSCLEAVERAVAQTDMSAILPLGRQHSLLNIINVVIQKLGHLINIYLPKLLQILL
CVTASVSNVLDKRDQLRAGCISPLKNLRRLGVLRVLDFFDVFDSYSYSPDELDAVFQAVV
WPQVCRLPTESINSPSPLLKLIHVWCKNARYFPLLAKHRSEHPECDVLMNVFALLSAKNA
SQPIINIVLDIVESLATTKDFVASEVETETEMETELSVNNSVFSQPAEGALVTADSLTQG
SRLLLPHISTLLRYLTSVVRNSDRLKKKKFRAQVAKELNILSKVSRFVSETEQSSVLISL
LLMYLQKGNNPQETEIDVLATVQNLLRQCVQPAVFLSPLSKLFSVIHNKLPRQALTNVFQ
TLSDLEPSLKYITDLAAKLNAFDSRHLDEIHFDLRLTAFQDATRCVKDMETLDLDYINTI
IYNCFHTYEIGDMSLADNATMCLSTIITQLAAVGPGEQIYKDIVQHTILDAVHKGLRSKT
ESVQHDYTNVLACLVKTFPSKKEFRDLVQLTDYNDLESDFFEHMKHIQIHRRGRALRKLA
KQLTEGTVVMTSRSLQNYIMPYAMTALLDEKMAKHDNMTSASVEVVGAVCRRLTWSKYLY
YLKHFVHILQTSQVEQKLAVNLLVTVLEAFHFDHQTFSREMEAAKAREAVSVSAEADDVD
EAAADESDASDDEKEMETDSKTAPADVPMEVDNVGESNVVSKEAATAKAKGPVAPKPVAV
TSGLPQSKDELETLISAIHRTVNDSVLPRLHRCLTAKVKRDDEHKAVRSKDVKEEEVSRI
PIAFAMVKLMQTLPPHIMEANLPGILIKVCVHLRNRFQEVRDVARATLVKIIETLGFRYL
HYLLKEMQSVLVKGYQVHVLTFTVHRLLFSLSPTLKSGDLDPCMNMLIDIFNNELFGAVA
EEKEVKGIVSKLMEARHSKSMDSYELLAKYSSKDSITKLMLPMKEILENSSSLKVCNRVG
AVLRRLILGLLVNGGMTPQDILLLSHGLVSQSLPLLTMRDREKTSAKPPPDPRLPPPSCL
LLPPTPKRGGQKAHISSRTNMHILVDAGLKLLHLSLRKSIVTSAEASTLEMLDPFVLLLL
ECIDSMHIKVITEALVGFSWLLKFPLPAVGQNAEQLTKQLFVLLKDYSKAGAGRGENYLL
VQSCFKAITILVKSVKSNNISETQLQVLLGYAEEDIYDQSRQATAFGLLKAILSRKLVVP
EMEEVLTKVAKLSVNGSNAMIRIHCRQIYLKYLLDYPLGRKLRHHMSFVVAQLQYEHDVG
RESVLEMLAFIFQTFPEKLLSKYSGLFFAPLALVVVNDDSARCKKMAAMAIKTLLTKLEL
NNKNTLYSLVNTWMSAEKASLRRLGAQICGLFVEVEGEKFARRLNDLLLLLEKEINPDNY
EDIEEEQDEKGADRLLFSYLTLLTKLCKHCGLLELRKPHDTLLNIWGHIEAHLRYPHCWV
WLTASQLYGQMFASQQADQLVAVWRGEGRDAASQSSTTAFITSNLDKKMRELALSFSLQL
QSKFLDTASGEQVIKNLLFVGKVIYLISPESDVTSTEEEVKEIEEEQQRENGDEVEGEGK
KEEIEKEEEEQKEEENEKEEEEEEKEEEEEDEDDKDDRAPSLLWLMKKLCLMAKREAAHT
PKVHVKRTSVFKFLGAIAMDLGEERLGPYLTTIISPLYRELDSTYAEQDPTLKNLAQELI
ELMKRKVGLQRFSLAFSAVQKEFTQRRVARKRHRAMQAVANPEIAAKKKIKKHKNKIEAK
KRKIEFLRPGYKAKRHRSHALRDLAIVQ
NT seq
8547 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaagtccaagtcctcgtatcacaagtcggagaacacgttcaggtttctcact
tttgctgaacgactttccaacgtcaacatcaatgtcgtccatcgcatcgacagaactgga
tcttatgctgaggaagtagaaacatacttttcggaagggctgacaaaatggagagacctc
aacttgaccgagcatttcacaacattctccaaagaggtgtccaacaacagccagtcgttc
aacatgctggttttccaccagaagacgatcgtggagagtctgaaaacacacctggctgtg
aagaacagcctggcctaccagcccctgctggacctggtggttcagctggccagagacctg
cagactgacttctatcctcacttccccgacttcttcgttctcatcacgtccctgctggac
accaaggacacagaggtcctggagtgggctttcacctgcctctcctacctctacaagtac
ctgtggagggtcatggtgaaggacatgaccaacatctacagtctgtacagcacactgctg
tcacacaagaaggaacatatccgcaagtttgccgcagagagcttctcttttttgatgaga
aaagttccagatctcgacgccctgctcactcatgtgttctcagacctgcagcagcaccct
gacaaggcagagggagcaggtcagctgctgtttgagatgtgcaaaggagtcagacacatg
ttccactctgccgctgctaatgctttccctgtggctttgcgtaagctcggccccacaacc
aacccgggagtctctctgccctgggacaccatcagggacgctctggatcacatggcccag
gttgcagccgatcacgtcgaaagagaacacttcctggttttatgggagtccttacaggtc
agtgtggtggaggtccttggtgtggtggaggcggggggagaagaggcagaccaggcgtca
gatcagctggagaggctgctgttcattctccacaccctggtgtcccacagagacggagcc
aaggtcaccaagccagaagccgtctgccagacggtgctgcggttgattcagagctcggct
ctgtcggttccctgttcccgcctcctcctccagatcatctcgtccctgctcctcggggag
aacatcagtctgcccaagtccctcattcaggagaccattcaaaaggtgtttggcagcaca
gtgggagaagacctgattctagagttcagcaaggagatgttcaccatgaaacagtttgag
cagctcttcctcccttgcctgctgcgcttcactgctgggttgttcagtagcggagacgcc
ctgtctcgccactgtggcctggaggtgctggtcagcctgatcctggctaaagccccgccc
ccgacagacggctccatggcctttgaaacgtacccactgctcttcaccggacagagcaca
ggtgtgctgagcagtaaggaggagggtcaggagagcagtacagcaccagagcagccgact
gtgccggagctggtgctgtccctcattaaattccctgaggagcagaaccagaccatcgct
gacctgtctctgccttggtccgccctgatgctgctgccacacatcagaccactgtctcca
gttaccgttgttcctgctgtgagcgctctcttaaaccacctcctgtgtcagattgacaca
gagaaaatgggaaaagccggtcttttcgtggccagacaggccctgagctgcctcctcagt
ctggacggctctgcccagctcctctctctggttactgtggacaaggtcacctcaatcttc
aggaggtttccctctgacctgtctgccttgctgctcggagacctctactatacccgcctg
tcactcagcggcgtttcagagcatctatcccacaatgcactgctggaggtcttccatatt
ctgcacgccaacctctcctccaacatctctaagatccgtcttctgactctgaggatcctc
tctcagtttgaggcggagctccctccaccgcctgagggtgaggaggccgtggacgtgcag
ccggtgtttgcagtttgcctgcaggcagaactggtgccggcgtcagtgcaggactacaga
gacaagctgcttcacctccggaagctcagacacgacctggtgcagcgcagcctgccacag
gggccggcaggatccttccagcaggtgcctctgcgttatctcatcgcaatgctgttcgtc
aacttcaggcccctgtgggacgcagtcattgaacttcttgtgagccatgccagagggatg
gacaacaaggagttctgggtggtctatcatgaacatctggagatggtggcagggatggca
gaaaaggaactgcgggactgtgatgaagatgacgacgtcagtgatgaagagcaagagtcc
agttctcagagtgagccgggctgcaacgtcattgaaagtggggacgtgggggtgctgttc
cttgaggagctgaagttgaccagtgaccccaacgaccggacggacttcccaaacttccgc
agcctgctgtggcgcgccatgacccagtttcctgagagagtggagccacgcagccgagag
ctgagtcctctgctgctcaggttcatcaggaatgagttttatcccgccgacctgatggta
gcccccactcaggacctgaggaaaaggaatgctgctgcccaagaggatgctgagatggct
gtggatgaagaggaggacgaagagcaggatgtggaggaaaaaggcccaaagcagaagaag
gcacgtccacggagagctgcttccaaacagctgattatccatttgagagtttttgccaaa
ttcaccaaccctcgttctctctacctggaggccagtctcggtgagctctataaccagttg
ctctgccatcaggaccagcagattcagggagtggccctggaatgtgttctcacatacaaa
gacccaaacattgtaccatacaaagagaatcttgagaggcttctgcaggacaaacacttc
aaggaggagattgtccatttcaacatttctgaggagacaggagtggttgaggcttcccac
agagtcaaactgattcctctgctcatgaggatcctgttcgggcgtctgcgcagcaaagcg
ggcagtaagttccaggggaaatcctccaccgcctcccgctcctccatcatcctgcgtttc
ctggccggctgccaggctgaggagctgggaatcttcgtcgacctgctgctggagcccgtc
tgccatcacagccaaggttcctgcctggaagcggtggagagggccgttgctcagacagac
atgagcgccatcctgccgctgggccgtcagcacagcctcctgaacatcatcaacgtggtg
atccagaaactgggccacctcatcaacatctacctgcccaaactgctgcagatccttctg
tgcgtcacagcctccgtgtccaacgtcctggacaaaagggaccagctgagagcaggttgc
atcagtcctctgaagaacctgaggcgactcggcgtcctgagggtcctggacttttttgac
gtctttgactcctacagctacagcccagacgagctggatgctgtcttccaggctgtggtc
tggcctcaggtgtgtcgtctgcccacagagagcatcaactctccgagccctctgctgaaa
ctcatccatgtgtggtgcaaaaatgccaggtacttcccccttctggccaagcacagatcc
gagcatccagagtgtgacgtcctcatgaacgtctttgccctcctctctgccaagaacgct
tcccaacccatcatcaacattgtattggacatagttgagtctctagcaacaaccaaggac
tttgttgcctcagaggtggagacggagacggagatggagacggagctgagcgtgaacaac
agtgtattctcgcagcctgcagagggcgctctcgtcactgcagattcattaactcagggc
tccagactgctgctgcctcacatctccaccctgctgcggtacctcacctccgtcgtacgc
aacagcgaccggctcaagaagaagaagttcagagcgcaggtggccaaggagctcaacatc
ctctccaaggtcagtcggtttgtgagcgagacggagcagagctcagtgctcatcagcctg
ctgcttatgtacctgcagaaaggaaacaaccctcaagagacagaaatcgacgtcctggcc
accgtacagaacctgctgagacagtgtgtgcagcccgccgtgttcctgagcccgctcagc
aaactgttctccgtcattcacaacaagttgccccggcaggccctcaccaacgtcttccag
actctgtcagatctggaaccttccctcaaatatatcactgatttagcagcaaagcttaat
gcgtttgacagtcgacacttggacgagatccacttcgacctgcgtctgacggcgttccaa
gacgccaccagatgcgtcaaagacatggagactctggacctggactacatcaacaccatc
atttacaactgtttccacacctacgagatcggtgacatgtcgctggcagacaacgccacc
atgtgtctgtctacgatcatcacccagctggcagcagtcggacctggagaacagatctac
aaggacatcgttcaacacaccatcctggacgctgtgcacaaggggctccgcagcaagaca
gagagtgtgcagcatgactacactaacgtgctcgcctgcctggtgaagaccttcccctcc
aaaaaagagttcagagacctggtgcagctcacagactacaatgacctggagtctgacttc
tttgagcacatgaagcacatccagatccaccgtcggggccgagcgctgaggaagttggcc
aagcagctgaccgaaggcacggtggtgatgacgtctcgctccctgcagaattacatcatg
ccgtacgccatgaccgccctgctcgatgaaaagatggccaagcatgacaatatgacgtca
gcatcggtggaggtggttggcgcagtgtgtcgcagactgacctggtccaagtacctgtac
tacctgaaacacttcgtccacatcctgcagacttcgcaggttgagcagaaactggctgtg
aatttgctggtcacagttctggaggcttttcatttcgaccaccagaccttcagcagagag
atggaggcagcgaaggccagagaagctgtgagtgtctcagccgaggcagacgacgtggat
gaagctgcagcggacgaatccgacgcaagtgatgatgagaaggaaatggagacggacagt
aagactgctccggctgatgttcccatggaagtggacaatgttggcgaaagcaatgtcgtc
tcaaaggaagcggccaccgctaaagccaagggaccagtggctcctaaacctgtggcagtg
accagcgggctgccacagagcaaagacgagctggagactctgatcagcgccatccaccgg
actgtgaacgacagcgtgctgcctcgtctgcacaggtgtctcaccgccaaggtgaagcgt
gacgacgagcacaaggcggtgaggtcaaaggacgtgaaggaggaagaggtgtcgaggata
ccgatagccttcgccatggttaaactgatgcagacgctgcctccgcacatcatggaggcc
aatctgcccggtatcctcatcaaggtgtgtgtgcacctgaggaaccgtttccaggaggtc
cgtgacgtggcaagagcaacgctggtgaagattattgagacgctggggttcagatacctg
cattacctgctcaaagagatgcagagcgtcctggtgaagggttaccaggtccatgttcta
acattcaccgtgcaccggctgctgttttccctcagtccaaccctaaagagcggcgacctg
gacccttgcatgaacatgctcatcgatatcttcaacaacgagctgttcggggccgtggcc
gaggaaaaggaggtgaaggggatcgtctccaagctgatggaggcgcgacacagcaagagc
atggactcgtacgagctgctggccaagtactccagcaaggacagcatcaccaagctcatg
ctgccaatgaaggagattctggagaattcatccagtctgaaggtgtgtaaccgggtgggt
gcggtgctgcggcgtctcatcctgggtctgctcgtcaacgggggcatgacccctcaggac
atcttactgctgagccacggcctggtcagccagagtctgccgctgctcaccatgagagac
cgagagaaaacgtcggctaagcctccccccgaccccagactgccccctcccagctgcctg
ctcctgcctccgaccccgaagagaggaggtcagaaggctcacatcagcagtcgaaccaac
atgcacatcctggtggacgccggcctcaagctgctccacctgagtctgaggaaatccata
gtgacgtcggccgaggcctcgaccctagagatgctcgaccccttcgtgctgctgctgctc
gaatgcatcgactccatgcacatcaaggtaatcacagaggctctggtgggcttcagctgg
ctgctgaagttccctctgccggcagtggggcagaacgcagagcagctgaccaagcagctc
tttgtcctgctgaaggattattccaaggccggagcgggccgcggggagaactacctcctg
gtccagagctgcttcaaggctatcaccatactagtgaaaagtgtcaaaagcaacaacatt
tcggagacgcagctgcaagtgctgctgggatacgctgaggaggacatctacgatcagtcc
cgccaggccaccgcctttggcctcctgaaggcgattctgtccaggaagctcgtggttcca
gagatggaggaggtgctgacgaaggttgccaagctatcagttaacggcagcaacgctatg
atcagaatccactgtcgacagatctatctgaagtacctgctggactacccactggggagg
aagctgaggcatcacatgtccttcgtggtggcgcagctgcaatacgagcatgatgtcggc
agggagtcggtgctggagatgctggcattcatcttccagactttccctgagaaattgctg
tcaaagtacagcggcctgttcttcgccccgctcgccctggtcgtggtgaacgacgactcg
gcacgctgtaaaaaaatggcggccatggccatcaagaccttgctaaccaagctggaattg
aacaacaagaacaccttgtactccctcgtcaacacatggatgagcgcagaaaaggcgagc
ctgcggcgtctcggggctcagatttgcggcctgtttgtggaggtggagggggagaagttt
gcccgtcgtctgaacgacctgctgctgctgctggagaaagagatcaaccctgacaactac
gaagacattgaagaggagcaggatgagaaaggagcagaccggctgttgttcagttatctg
actctcctcaccaaactctgcaaacactgcggcctgctggagctccgcaaacctcacgac
acactccttaacatctggggtcacatcgaagcccatctgcggtaccctcactgctgggtg
tggctgacggcctcgcagctgtacggccagatgttcgcatcccagcaggcagaccagctg
gtcgccgtttggagaggagagggcagagacgctgcctcccagtcgtcaaccacagccttc
atcaccagcaacctggacaagaagatgagagagttggcgttgtcgttcagcctccagcta
cagtccaagttcctggacacagcatcaggagagcaggtgatcaagaatctgctgttcgtc
ggcaaggtgatctacctcatttcccccgagtccgacgtcacgtccactgaggaagaagtg
aaagagatagaggaggagcagcagagggagaatggagatgaagtggagggagaaggaaag
aaggaggagattgaaaaggaagaagaggagcagaaggaggaggagaacgaaaaggaagag
gaggaggaagagaaggaggaggaggaagaggatgaagacgacaaggacgatcgagctccg
tctctgctgtggttgatgaagaagttgtgtctgatggccaagagagaggcagcacacact
cccaaagtccacgtgaagagaacgagtgtgtttaagttcctgggcgctatagccatggac
ctgggggaggaacgcctgggcccgtacctgaccaccatcatcagtcctctgtacagagag
ctggacagcacctacgcagaacaagaccccacgctgaagaacctggcacaggagctgatc
gagctgatgaagaggaaagtggggctgcagaggttctccctggctttctccgccgtgcag
aaggagtttacacagaggagagtggcacggaaacgacacagagccatgcaggccgttgcc
aacccagaaatcgccgccaagaagaaaatcaagaagcacaagaacaaaatcgaagccaag
aagaggaagattgagtttctacgacccggatataaagccaagaggcaccggagccacgcg
ctcagagacctggccattgtgcagtga
DBGET
integrated database retrieval system
