Hippoglossus hippoglossus (Atlantic halibut): 117757972
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Entry
117757972 CDS
T07778
Name
(RefSeq) syndecan-1-like
KO
K16338
syndecan 4
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04512
ECM-receptor interaction
hhip04514
Cell adhesion molecule (CAM) interaction
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117757972
04514 Cell adhesion molecule (CAM) interaction
117757972
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117757972
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hhip00535
]
117757972
Proteoglycans [BR:
hhip00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
117757972
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
DUF202
Caa3_CtaG
Motif
Other DBs
NCBI-GeneID:
117757972
NCBI-ProteinID:
XP_034435108
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All DBs
Position
24:5665191..5667623
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AA seq
140 aa
AA seq
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MSRTLTAALLFTLVSALLLRTSIATPPEDSEGSGYDLSTSGSGDGSEHGEVGDVMGRPGS
KERTFNRPLWSDSDVRSGYVIVSNSKSFLENQQIVGGIIAGGVTGLVLAVILMAILIYRW
RNKDNVGYFQGQQTHREEDD
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggactctcaccgcggctcttctcttcactctggtctcagctcttctgctcagg
acgtcgattgccacacctcctgaagactcggagggatcaggctatgacctgagcacgtct
ggttcaggggatgggtcagagcacggtgaggttggcgacgtcatgggtcgtcccggcagc
aaagagcggaccttcaacagacctctgtggtctgacagcgacgtgaggtcaggatacgtt
atcgtgtcaaacagcaagagcttcttggagaaccaacagatcgttggaggcattatcgca
ggaggagtaacggggctggtactggcagtgatactgatggcaatattaatatacaggtgg
cgcaacaaagataatgtaggatactttcagggccagcagacccaccgggaagaagatgat
taa
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