Hippoglossus hippoglossus (Atlantic halibut): 117758004
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Entry
117758004 CDS
T07778
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117758004 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hhip04121
]
117758004 (trim54)
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117758004 (trim54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-B_box
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
TRIM_CC
Gpi16
CoiA_N
Cep57_MT_bd
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
117758004
NCBI-ProteinID:
XP_034435174
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All DBs
Position
24:complement(2112667..2121741)
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AA seq
365 aa
AA seq
DB search
MNFAPGFRPPSAGRSGPGAGGGATMENLEKQLICPVCLEMFSKPVVILPCQHNLCRKCAN
DIFHSANRLWQSRGSSSIAASGGRFRCPSCRHEVALDRHGVFGLQRNLLVENIIDIYRQQ
ESSRLVNMKPEQQQQLMCDDHEEEKINIYCLSCETPTCSMCKVFGRHKDCDVAPLSSVYM
RQKTELSDGIAILVASNDNIQAAISQLEEICRTVEESGRRQREQLAAHFDGLVSVLEERK
QELVGHISREQDDKLRHLRCLIRRHGDHQEAAVTLVESAIQSMDEPHMPLFIQSATVLLE
KMAVTARASNMERPELGYESMSHFFIDTDDLTDMLQNMDFCSGVGDEEDSEDVGEESELD
FGCRY
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcccccggcttcaggcccccctcagcaggcagatccgggcctggtgccggc
ggaggagccaccatggagaacctggagaagcagctgatctgccccgtctgcctggagatg
ttctccaagcccgtggtcatcctgccctgccagcacaacctctgccgcaagtgcgccaac
gacatcttccactcagctaaccgtctgtggcagagccgcggctcctccagcatcgctgcc
agtggcggtcgtttccgctgtccgtcatgtcgccacgaggtggcgctggaccgccacgga
gtgttcggcctgcagaggaacctgctggtggagaacatcatcgacatctacagacagcag
gagtcctccaggcttgtaaacatgaagccggagcagcagcagcagctgatgtgtgacgac
catgaagaggagaagatcaacatctactgtctctcgtgtgagacgccgacctgctccatg
tgcaaagtgttcggacgacacaaggactgtgacgtggctccgctcagcagcgtctacatg
agacagaagacggagctgagcgacggcatcgccatcttggtcgccagcaacgacaacatc
caggcggccatctctcagctagaggaaatatgccgcactgtggaggagagcggcaggcgg
cagagagagcagctcgccgcccacttcgacggcctggtgtccgtcctggaggagcggaag
caggagctggtcggtcacatctccagagaacaggacgacaaactgagacacctgcgatgc
ctcatccgtcggcacggcgaccaccaggaggccgcggtcacgctggtggagtcggccatt
cagtccatggacgagccgcacatgcctctgttcatacagagcgccacagtccttctggag
aaaatggcggtgacggcgagggcctcgaacatggagcgtccggagctcggctacgagagc
atgagccacttcttcatcgacactgacgacctgacggacatgttacagaacatggacttc
tgctctggtgtgggagatgaagaggactctgaagacgtgggagaagagtcagaacttgac
tttggctgcagatactga
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