Hippoglossus hippoglossus (Atlantic halibut): 117758574
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Entry
117758574 CDS
T07778
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117758574 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117758574 (cdc40)
Spliceosome [BR:
hhip03041
]
Complex C
Other components
Step II factors
117758574 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_DCAF4
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_Vps41
MINT_RID
Motif
Other DBs
NCBI-GeneID:
117758574
NCBI-ProteinID:
XP_034436260
LinkDB
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Position
24:complement(8572867..8586969)
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AA seq
581 aa
AA seq
DB search
MSAAISSLVSYGSDSDSDNESESKTAAGKVDPVDPDAMAHLKPLKSEPTMTLALLNSAPE
VAVKEGVETGIHLDPALKEVTYNPTFETLFAPEFGPMNPFKSQQMSAPRNMLSGFAEPAH
VNDFMFEQQRRTFSTFGYALDPSVDTHDVSTSSYIGAVEDAEKNKGLTVFESGHTKSEKR
KKVKGGEAGEIDNFLGPWAKYADEKDLAKPTEEEKKELDEILAKRQKRGKNEEESPAEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSAEVPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSSSMDCKIKLWEVYGERRCIRTFIGHSKAVRDICFNNSGTKFLSAGYDRYLKL
WDTETGQCISPFTNKKVPYCVKFNPDEEKQSLFVAGMSDKKIVQWDIRTKEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgccataagttccctcgtttcgtacggcagcgattcggactcggacaatgag
tcggaatcgaaaaccgctgcggggaaagtggacccagtggatccggacgccatggcccat
ctcaagcctcttaagtctgaacccaccatgactctggctcttcttaattccgctcccgag
gtcgccgtgaaggagggtgtggagactggcatacatctggaccctgcgctgaaagaagtc
acctacaacccgacatttgaaaccctgtttgcaccagagtttgggccaatgaatccgttc
aaaagtcagcagatgtctgccccaaggaacatgttgtctggcttcgcagaacctgctcac
gtcaacgacttcatgtttgagcagcaaaggaggacattctccacctttggttatgctcta
gatccctctgttgacacacacgatgtatccacaagtagctacattggtgcagtagaagac
gctgagaaaaataaagggttaactgtgtttgagagtggacatacaaaatctgagaaaagg
aaaaaggtcaaaggcggagaagcaggagagattgacaacttccttggaccctgggcaaaa
tatgccgatgagaaggatttggccaaaccaacagaggaagagaagaaagagctggatgaa
atcttggccaagagacagaagaggggaaagaatgaggaagaatctccagcagaggagaag
actattctccatgttaaagacatgtatgattaccagggcaggtcctacctccacgttcca
caggatgtgggcatcaacctgcgttctgcagaagttccagacaagtgttatctgcctaag
aaacagattcatgtctggtccggacacaccaagggtgtcagtgcgatccgactatttcct
agctctggccatctactgctctcctcctccatggactgtaagatcaagctgtgggaagtg
tacggcgagaggaggtgcatacggacgtttattggccacagcaaagcagtacgagacatt
tgcttcaacaacagtgggaccaagttcctcagcgctggctatgaccgctacctgaaactg
tgggacactgaaacaggccagtgcatctcccccttcaccaacaaaaaggtcccgtactgc
gttaagttcaacccggacgaggagaagcagagcctttttgtggccggcatgtcggacaag
aaaattgttcagtgggacatcagaacgaaggaggtggttcaggagtacgaccgtcacctg
ggagccgtcaacaccatcacctttgttgatgagaatcgtcggtttgtcagcacatcagac
gataaaagtcttagagtgtgggagtgggacatccctgtggacttcaagtacattgctgag
cccagtatgcactccatgccagctgtgacactctctcccaatggtaaatggctagcatgc
cagtccatggacaaccagattcttatcttcggagcccagaaccgcttcagactgaacaag
aaaaaggtcttcaagggccacatggtggccggctatgcctgccaagtcgacttctcccca
gacatgagctacgtggtctcgggagatgcggacggaaagctgaacatctgggattggaag
accaccaagctttaccacaggatcaaggctcacgacaaggtttgcatcagcgccctgtgg
catccacacgaaacctccaaggtcatcacctgcggctgggacggacaaatcaaactctgg
gactag
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