Hippoglossus hippoglossus (Atlantic halibut): 117758858
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Entry
117758858 CDS
T07778
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117758858 (ddx1)
03016 Transfer RNA biogenesis [BR:
hhip03016
]
117758858 (ddx1)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117758858 (ddx1)
Spliceosome [BR:
hhip03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117758858 (ddx1)
Transfer RNA biogenesis [BR:
hhip03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117758858 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
117758858
NCBI-ProteinID:
XP_034436750
LinkDB
All DBs
Position
24:11115767..11123033
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEELEWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDEQEGKKGRASVKSGGAIFNNWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKGVIKGKYYYEVACHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDNSQMSFSKNGNDLGVAFEIPPNLKSQSFFASCVLKNAELKF
NFGGESFKNTPKSGFVALDQAAEGHSVKSSQAGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNVVKNFQKYVENPKLRELLVIGGVAAKDQLAALEQGIDIVVGTPGRLDDLISTGKLV
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRAGAN
SAEMWSEAIKLLKGEYAVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKTHQL
SCVCLHGDRKPNERKNNLERFKKKEVRLLVCTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKDEGGCTIWYQEKELLS
DIEEHLKCTITQCEPDIKVPLDEFDGKVSYGQRRALTGGKYKGHVEALAPTVQELANLER
EAQSSFLQLGYMPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtttggtgaaatgggcgtcatgcctgaaatcgcgcaggctgtggaggagctg
gaatggctgctgcctactgacatccaggctgagtccatccctcttatcctcggtggagga
gatgtactcatggctgcagaaaccggcagcggtaaaacaggggccttcagcatcccagtg
atccagattgtgtacgagaccctgaaggacgagcaggagggcaagaagggccgagcctcc
gtcaagtccggaggagcaattttcaacaactggcagatgaatccttacgaccgcagtaca
gccttcgcaatcggtccagatggtctgtgctgccagagcagggagtttaaagagtggcac
ggctgccgctctacaaaaggtgtcatcaaagggaagtactattatgaggtggcctgtcac
gatcaaggtctgtgccggatcggctggtccaccagtcaggcagcactggacctgggaact
gataaatatggctttggttttggaggaactggaaagaaatccaacaacaagcagtttgac
agttacggagaggagtttaccatgcatgatactattggatgctacctggatctagacaac
agccaaatgtccttctccaaaaatggtaacgacctcggtgtggcttttgagatccctccg
aatctgaagagtcagagcttctttgcctcctgtgtgcttaagaatgcagagcttaagttc
aactttggaggagagagctttaaaaacaccccaaaaagtgggtttgttgccctggatcag
gcagcagagggtcacagcgtcaaatcctctcaggcaggcagtgctaaagtcagtcaggtg
aaagcctcctccaatgcacccaaagccctgatcatcgagccgtccaaagaattagcagag
caaactctcaacgtcgtcaaaaactttcagaaatatgtggaaaaccccaaactcagggaa
ctgctggtgattggcggtgtggctgccaaggatcagctggctgctctcgaacaggggatc
gacattgtggtgggaacacccggccgactggacgacctcatttccaccgggaaactcgtt
ctgtcccaagtccgcttccttgtcctggacgagtgtgacggcctcctctcagcaggatat
acagattttatcaacaggatccataaccaaatcccgcaggtcacctctgatggcaagaga
ctgcaggtgatagtgtgctccgccactctgcattcctttgacgtgaagaagttgtccgag
cgcatcatgcacttccccacgtgggtggacctgaagggcgaggactctgtcccagagacg
gtccatcacgtggtggtgcctgtcaaccctaagaccgatcggctgtgggagcgactggga
aagaaccacatccggactgatgaagtccatgccaaagataataccagagcaggagccaat
tctgcagaaatgtggtccgaggcgatcaagcttctgaagggcgagtacgcggtgcgcgcc
atcaaagagcacaagatggaccaggccataatcttctgtcgcaccaagattgactgtgac
aacatggaacagtacttcatccagcaaggaggaggtccagacagtaaaacccaccagctt
tcttgtgtttgtctccatggcgatcgtaagcccaacgagcggaaaaataacttggagcgt
ttcaagaaaaaagaggtgagacttctggtctgcacagatgtagccgccagaggaattgac
atccacggagttccttacgtgattaacgtcacgctgccagatgagaagcagaactatgtc
catcgcattggaagagttggaagagctgagagaatgggactggccatctccttagttgct
atggaaaaagagaaggtgtggtaccacgtttgcccgaaccggggccgaggctgctacaac
acccgactgaaggacgagggcggttgcaccatctggtaccaggagaaagagctcctgtca
gacattgaggagcacctgaagtgcaccatcacccagtgtgagccggacattaaagtacct
ttggatgagttcgatggaaaggtctcgtatggtcagcgcagggcattgacaggtggaaag
tacaagggtcatgtggaggcgctcgctccaactgtccaggaactggctaacctcgagaga
gaagcccaatcttccttcctgcaattgggatacatgccaaaccagcttttcaaagccttc
tga
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