Hippoglossus hippoglossus (Atlantic halibut): 117759298
Help
Entry
117759298 CDS
T07778
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X1
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117759298 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117759298 (smarca5)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117759298 (smarca5)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
117759298 (smarca5)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
117759298 (smarca5)
RSF complex
117759298 (smarca5)
WICH complex
117759298 (smarca5)
B-WICH complex
117759298 (smarca5)
NORC complex
117759298 (smarca5)
BRF complex
117759298 (smarca5)
NuRF complex (fruit fly)
117759298 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
117759298
NCBI-ProteinID:
XP_034437256
LinkDB
All DBs
Position
1:21049500..21058053
Genome browser
AA seq
1036 aa
AA seq
DB search
MSESENCVLPREELPEVVEARGAEDKSDSSDAGKESSSDAGPDGADASSSSAIAPGYEEK
VQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSAGELSL
IDSNRHRRTEQEEDEELLNESTKTTNVCARFDDSPSYVKAGKMRDYQVRGLNWLISLYEN
GINGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRA
VCLIGDREQRTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEK
SKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTNNCLGD
TKLVERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNS
AGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLAVNSGKMVVLEKLLPKMKQ
QGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINTFNEPGSAKFIFML
STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERI
VERAEMKLRLDSIVIQQGRLVDPNANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAI
LERGERKTMELKEKMSSLGESTLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRE
RKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIG
YKVPRNLEMPNSAQAQKEEQAKIDEAEALTEEELEEKENLLQQGFTIWNKRDFNQFIKAN
EKWGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISI
KKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCI
RNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKGASAQKRK
SEGTPDGRGRRKKLKL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagcgaaaactgcgtgctgccgcgggaagagctccctgaagttgtagaagcc
agaggagcggaggataagtctgactcttcagatgctggaaaagagtcctcctcagatgcc
ggtcccgatggagcagatgcatcatcttcctcagctattgctccaggttacgaggagaaa
gtgcaaacagaccggaccaacagatttgagtacctgttgaagcaaacagagttgtttgct
catttcatccaaccagctgcacagaagacccctacctctccactgaagatgaaaccagga
cgtcctcgcataaaaaaagatgaaaaacaaaacctgctgtctgctggagaattgtctttg
attgacagcaaccggcaccggcggacggagcaggaggaggatgaagagcttctgaacgaa
agcaccaagacgaccaatgtctgcgctcgttttgacgattctccctcttatgtcaaagct
gggaaaatgagggactatcaggtccgtggcttgaactggctcatctctttgtatgaaaat
ggcatcaatggcatcctcgctgatgaaatgggtttgggtaaaactctccagactatcgcc
ctgctgggttacatgaagcactacagaaacatcccgggtccccacatggtgctggtgccc
aagtccaccttatacaactggatgaacgagttcaaacgatgggttccctctcttcgtgca
gtctgcctgattggagacagagaacagaggactgctttgatcagagatgtgctgctgcca
ggagagtgggatgtgtgtgtcacatcctacgagatgctcatcattgaaaaggctgtgttc
aagaagttcaactggaggtacctcgtaatcgacgaagcccacaggatcaagaatgagaaa
tcaaagctatcagaaattgtacgagaattcaagaccaccaatcgtttactgctgactgga
acaccccttcaaaacaacctccacgagctgtgggctctgctcaacttcctgctgcctgac
gtctttaactcagcagatgactttgactcctggtttgacacaaacaactgcttgggtgac
acgaagttggtggaacgtcttcacactgttctacgtcctttcttgctccgtcgtattaaa
gctgacgtggagaaaactttgctcccaaaaaaagagatcaagatgtacgtgggcctgagc
aagatgcagcgagagtggtacacaaagattctgatgaaggacattgacattctgaactca
gcgggtaagatggacaagatgcgcctgctgaacgttctcatgcagctcagaaaatgttgc
aaccacccgtacctgttcgacggagctgagccaggtcctccgtacacaactgacctgcat
ctggccgtgaacagcggcaagatggtggtgctggagaagctgctacccaagatgaagcag
cagggttcccgtgtgctcatcttcagtcagatgaccagggtgctggacatcttggaggac
tactgcatgtggaggaactatgggtactgccgcttggatggtcagacgccgcacgaggaa
agacagatctctatcaacacattcaatgagcccggcagcgctaagttcatcttcatgttg
agcaccagggccggtgggctggggatcaacctggctacagccgacgtcgtcatcctctac
gactcggactggaaccctcaagtcgacctgcaggccatggaccgagctcacaggattggt
cagcagaagcaggtacgcgtctttcgtttcatcaccgaaaacacagtggaggagaggatc
gtagagagggccgagatgaaactgcgcctggactccattgtcatccagcaaggaagactc
gtggatccaaacgcaaacaagctgggcaaggatgagatgctgtccatcatccgtcacggt
gccacacacgtgttcgcttccaaagagagtgagatcacagatgatgacattgatgcaatc
ctggagagaggtgaaagaaagactatggagttgaaggagaagatgtcgtctctgggtgag
agtaccctgagaaacttcaccatggacacagagaacagcagcgtgtacacatttgaagga
gaggactatagagagaagaaaaaggtcattaccaactggatcgagccgcccaagagagag
aggaaagccaattacgctgtggatgcctactttagagaagccctgcgtgtcagtgaaccc
aaagcacccaaggctcctcgtcctcccaagcagccaaatgtccaggacttccagttcttc
ccccctcgtctctttgagcttcttgaaaaggaaattctcttctataggaagaccataggc
tacaaggttccccgtaacctggaaatgccaaactctgctcaggcgcagaaagaggagcag
gctaagattgacgaggccgaggctctcacagaggaggagctggaggagaaggagaacctg
ctgcaacagggatttactatttggaacaaacgtgacttcaaccagtttatcaaagccaac
gagaagtggggaagagatgatatcgagaacatcgccagagaagtggaggggaaaaccccc
gaagaagtcatggaatattctgctgttttctgggagcgctgcaatgagctgcaggacatc
gagaagatcatggcccagatcgagagaggagaggccaggattcagagaaggattagcatc
aagaaagcacttgactcaaagattggtcgctacaaggctcccttccatcagctccgtatt
tcctacggcaccaacaaaggcaagaactacacggaggaagaagaccgcttcctcatctgt
atgctccacaagctgggcttcgacaaggagagtgtgtacgatgagctgcgtcagtgcatc
cgtaactcacctcagttccgcttcgactggttcctcaagtccaggaccgccatggagctt
cagagacgatgcaacaccctaattacgctgatagagagagagaacatggagctggaggag
agggagaaggccgagaagaagaaacgaggtccaaagggtgcatcagctcagaaacgaaag
tcagagggaacccccgacggtcgcggacgcaggaagaagctcaagttgtga
DBGET
integrated database retrieval system
