Hippoglossus hippoglossus (Atlantic halibut): 117759349
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Entry
117759349 CDS
T07778
Symbol
si:ch211-79m20.1
Name
(RefSeq) putative mediator of RNA polymerase II transcription subunit 26 isoform X1
KO
K17386
platelet-derived growth factor subunit B
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04010
MAPK signaling pathway
hhip04020
Calcium signaling pathway
hhip04510
Focal adhesion
hhip04540
Gap junction
hhip04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117759349 (si:ch211-79m20.1)
04020 Calcium signaling pathway
117759349 (si:ch211-79m20.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117759349 (si:ch211-79m20.1)
04540 Gap junction
117759349 (si:ch211-79m20.1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
117759349 (si:ch211-79m20.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
hhip04052
]
117759349 (si:ch211-79m20.1)
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117759349 (si:ch211-79m20.1)
Cytokines and neuropeptides [BR:
hhip04052
]
Cytokines
Growth factors (RTK binding)
117759349 (si:ch211-79m20.1)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Growth factors/receptors
117759349 (si:ch211-79m20.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
117759349
NCBI-ProteinID:
XP_034437311
LinkDB
All DBs
Position
1:complement(26166470..26183272)
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AA seq
573 aa
AA seq
DB search
MRSWVLLLLLSALSAARLRLGSAEGDPLPPSLVDLVRNSPISSVDELKVLLLQEANAIEE
EEDEHDFLTNHTHGRYSRSLVEAQQAQLANCKVRTEVMEVTRSMLDRRNADFILWPPCVE
VQRCSGCCNARHLQCIPTVTSSRYLKVLKIQVIKGQPHYTYAMISVEDHVSCRCQPATSS
SSSSSSSSSSSSSSSSSLPVANSPVQSSPNPPPPPPQQPASSSHLPLPLPRSVHPAPPKS
HASKADLHRHDVLKHNQQRYHSEEREPVARQWQQGSYTQLVHWTQPRVHQGPAHQPIAGV
LGSVSSWPSEARAEHSVMGSTQQVGHGSGFEGSREEGSVASNTEGHHPDHAQRQQQVLQH
QQRQQHQQPHLHHRQPHYPQPYNHGGAEDPELRTQHRLNAPQSDSALPPVSPTLPPASEQ
NPTLPLTTNQRDSVTSQIITQVTKQTETETVSQGSEREESGSANSGDSAGAEPANQGRER
DSKLTTEDGHLTEEEERRHKLLEMVQSEPDKQTHLHPHPPQQRPKPTTFITVVSTVAPMS
PAARQAPFRPASPRRRRKHRKRISKAALRAMIM
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcctgggtcctgctgctgctgctgagtgcgctgtcagcggcgcgtctgaggctc
ggcagcgctgagggcgatcctctccctccgtcgctggtcgacctggtgaggaattctccc
atctcctctgtagacgagctgaaagtgctgctgctgcaggaggccaatgcaatagaagag
gaagaggatgagcacgactttctcacaaaccacacccacggcagatactctagaagtctt
gtggaggcgcagcaggcgcagctggcgaactgtaaagttcggacagaggtgatggaggtg
accaggtccatgctcgaccgccgcaacgccgacttcatcctgtggccgccgtgcgtggag
gtgcagagatgttcgggctgctgcaacgcgaggcacctgcagtgcatccccaccgtcacc
tccagcagatacctgaaggtgctaaagatccaggtcatcaagggtcaacctcactacacc
tacgccatgatatcagtggaggaccacgtcagctgcagatgccaacctgccacatcttcc
tcgtcctcttcatcctcttcgtcctcttcgtcctcttcgtcctcctcgtcccttcccgtc
gctaactcccccgttcagagcagccccaacccccctccgcctccaccacagcagcctgcc
tcctcctcccaccttcccctgccccttccacgatctgtccaccctgctccgcccaagagt
cacgcctccaaggctgacctccatcgccacgacgtcctgaagcacaaccagcagcgctac
cattccgaggagcgcgagccggtggccaggcagtggcagcagggcagctacacccagctg
gtgcactggacccagcccagggtgcaccaggggcccgcgcaccagccgatcgccggggtg
ctaggatccgtcagcagctggccgtcggaggcgagggcggagcatagcgtcatgggaagt
acgcagcaggtcgggcacgggagtgggtttgaggggagcagggaggagggcagcgtggcc
tcgaacactgaagggcatcatcccgatcacgcccagaggcagcagcaggtgttacagcat
cagcagagacaacagcatcagcagccacatctgcatcatcgtcagccacattatccacag
ccgtacaaccacggaggggccgaggaccccgagctgaggacgcagcatcgactcaacgct
cctcagtccgacagcgccttgccccccgtcagcccgacactcccacccgcatcggagcaa
aaccccacccttcctctaaccaccaatcagagagactcagtgaccagccaaataattaca
caggtcacaaaacagactgagactgaaacagtcagtcaagggagcgagagggaggagagt
ggctcggccaatagcggggactcggccggtgctgagccggccaatcaggggagggagaga
gactctaagctgaccacagaagacggtcatttaacagaggaggaggagaggaggcacaaa
cttctagagatggtacagagcgaaccggataaacagactcatcttcatcctcatcctcct
cagcaaagaccaaagccgaccacgtttataacagtcgtgtctactgtggcccccatgtcc
cccgctgcacgtcaggccccgttccgtccggcttcccctcgccgcaggaggaaacaccgc
aaacgcatcagcaaagccgccctcagagccatgatcatgtag
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