Hippoglossus hippoglossus (Atlantic halibut): 117759349
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Entry
117759349 CDS
T07778
Symbol
si:ch211-79m20.1
Name
(RefSeq) putative mediator of RNA polymerase II transcription subunit 26 isoform X1
KO
K17386
platelet-derived growth factor subunit B
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04010
MAPK signaling pathway
hhip04020
Calcium signaling pathway
hhip04510
Focal adhesion
hhip04518
Integrin signaling
hhip04540
Gap junction
hhip04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117759349 (si:ch211-79m20.1)
04020 Calcium signaling pathway
117759349 (si:ch211-79m20.1)
09133 Signaling molecules and interaction
04518 Integrin signaling
117759349 (si:ch211-79m20.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117759349 (si:ch211-79m20.1)
04540 Gap junction
117759349 (si:ch211-79m20.1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
117759349 (si:ch211-79m20.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
hhip04052
]
117759349 (si:ch211-79m20.1)
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117759349 (si:ch211-79m20.1)
Cytokines and neuropeptides [BR:
hhip04052
]
Cytokines
Growth factors (RTK binding)
117759349 (si:ch211-79m20.1)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Growth factors/receptors
117759349 (si:ch211-79m20.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
117759349
NCBI-ProteinID:
XP_034437311
LinkDB
All DBs
Position
1:complement(26166470..26183272)
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AA seq
573 aa
AA seq
DB search
MRSWVLLLLLSALSAARLRLGSAEGDPLPPSLVDLVRNSPISSVDELKVLLLQEANAIEE
EEDEHDFLTNHTHGRYSRSLVEAQQAQLANCKVRTEVMEVTRSMLDRRNADFILWPPCVE
VQRCSGCCNARHLQCIPTVTSSRYLKVLKIQVIKGQPHYTYAMISVEDHVSCRCQPATSS
SSSSSSSSSSSSSSSSSLPVANSPVQSSPNPPPPPPQQPASSSHLPLPLPRSVHPAPPKS
HASKADLHRHDVLKHNQQRYHSEEREPVARQWQQGSYTQLVHWTQPRVHQGPAHQPIAGV
LGSVSSWPSEARAEHSVMGSTQQVGHGSGFEGSREEGSVASNTEGHHPDHAQRQQQVLQH
QQRQQHQQPHLHHRQPHYPQPYNHGGAEDPELRTQHRLNAPQSDSALPPVSPTLPPASEQ
NPTLPLTTNQRDSVTSQIITQVTKQTETETVSQGSEREESGSANSGDSAGAEPANQGRER
DSKLTTEDGHLTEEEERRHKLLEMVQSEPDKQTHLHPHPPQQRPKPTTFITVVSTVAPMS
PAARQAPFRPASPRRRRKHRKRISKAALRAMIM
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcctgggtcctgctgctgctgctgagtgcgctgtcagcggcgcgtctgaggctc
ggcagcgctgagggcgatcctctccctccgtcgctggtcgacctggtgaggaattctccc
atctcctctgtagacgagctgaaagtgctgctgctgcaggaggccaatgcaatagaagag
gaagaggatgagcacgactttctcacaaaccacacccacggcagatactctagaagtctt
gtggaggcgcagcaggcgcagctggcgaactgtaaagttcggacagaggtgatggaggtg
accaggtccatgctcgaccgccgcaacgccgacttcatcctgtggccgccgtgcgtggag
gtgcagagatgttcgggctgctgcaacgcgaggcacctgcagtgcatccccaccgtcacc
tccagcagatacctgaaggtgctaaagatccaggtcatcaagggtcaacctcactacacc
tacgccatgatatcagtggaggaccacgtcagctgcagatgccaacctgccacatcttcc
tcgtcctcttcatcctcttcgtcctcttcgtcctcttcgtcctcctcgtcccttcccgtc
gctaactcccccgttcagagcagccccaacccccctccgcctccaccacagcagcctgcc
tcctcctcccaccttcccctgccccttccacgatctgtccaccctgctccgcccaagagt
cacgcctccaaggctgacctccatcgccacgacgtcctgaagcacaaccagcagcgctac
cattccgaggagcgcgagccggtggccaggcagtggcagcagggcagctacacccagctg
gtgcactggacccagcccagggtgcaccaggggcccgcgcaccagccgatcgccggggtg
ctaggatccgtcagcagctggccgtcggaggcgagggcggagcatagcgtcatgggaagt
acgcagcaggtcgggcacgggagtgggtttgaggggagcagggaggagggcagcgtggcc
tcgaacactgaagggcatcatcccgatcacgcccagaggcagcagcaggtgttacagcat
cagcagagacaacagcatcagcagccacatctgcatcatcgtcagccacattatccacag
ccgtacaaccacggaggggccgaggaccccgagctgaggacgcagcatcgactcaacgct
cctcagtccgacagcgccttgccccccgtcagcccgacactcccacccgcatcggagcaa
aaccccacccttcctctaaccaccaatcagagagactcagtgaccagccaaataattaca
caggtcacaaaacagactgagactgaaacagtcagtcaagggagcgagagggaggagagt
ggctcggccaatagcggggactcggccggtgctgagccggccaatcaggggagggagaga
gactctaagctgaccacagaagacggtcatttaacagaggaggaggagaggaggcacaaa
cttctagagatggtacagagcgaaccggataaacagactcatcttcatcctcatcctcct
cagcaaagaccaaagccgaccacgtttataacagtcgtgtctactgtggcccccatgtcc
cccgctgcacgtcaggccccgttccgtccggcttcccctcgccgcaggaggaaacaccgc
aaacgcatcagcaaagccgccctcagagccatgatcatgtag
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