Hippoglossus hippoglossus (Atlantic halibut): 117759670
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Entry
117759670 CDS
T07778
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb
KO
K10357
myosin V
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
117759670 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117759670 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
hhip04131
]
117759670 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
hhip03029
]
117759670 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hhip04812
]
117759670 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
117759670 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
117759670 (si:dkey-110c1.10)
Membrane trafficking [BR:
hhip04131
]
Others
Actin-binding proteins
Myosins
117759670 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
hhip03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
117759670 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
hhip04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
117759670 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
AAA_22
AAA_16
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117759670
NCBI-ProteinID:
XP_034437788
LinkDB
All DBs
Position
4:complement(10493445..10512229)
Genome browser
AA seq
1658 aa
AA seq
DB search
MATLELYSKGASVWIPDSDAVWVSAQLLQDYAPGEKHLLLQLSNGKEMHYPVGSPADLPP
LGNPDILEGENDLTALSFLHEPAVLHNLRVRFLDYSSIYTYCGIVLVAINPYDQLHIYGE
EVIDAYSGQDMADMEPHIFSVAEEAYRTMTREEKNQSIIISGESGSGKTVSAKFTMRYFA
VVGGAAQQTSVEERVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFGRKGDIIGAKMRT
YLLEKSRVVFQASSERNYHIFYQLCASRELPEMRSLKLDAPENFRYTNQGGEMQIPGADD
VSDLERTRNAFTILGVQPGQQMELFRILSAILHLGNANIQASGRSSDKSYIDADDRSLAV
FSKLLGVEGPQMAHWLCHRRLAVGGEMLVKPRSGQQAVVARDALAKHIYGQLFTWTVQRL
NSALRSQRGQTRSFIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFHLEQEEYV
REELPWSKIEFSDNQQCINLVEGQLGLFDLLDEECRMPKGSDESWVRKLYDQHLTSKPHP
HFQKPRMSNSAFIVLHFADLVQYECEGFLDKNRDTVYEELVNIMKASQSELVAELFQQQE
NVSSVANGSVRSGKRATREHRLTVGFQFRQSLQMLMDTLNSTTPHYVRCIKPNDLKEPFM
FDPKRTVQQLRACGVLETIRISAAGFPSRWTYEEFFSRYRVLLRGPQSLEQAQASCRRTL
PQIISDPDQYCFGKTKVFFRAGQVALLERLRAERLREAAVVIQSRVRGWLSRIRFTRVLW
ATVIIQRYSRGALARRLALTLRYTKAALVIQKMYRMVVVRQLFLMIRQATVTIQAFTRGT
LARRTYRQLVAERATVLLQARVRGWLARRAYRRVRAAVVFMQCCVRRRAARRRLLKLKTE
ARSVEKYRELNKGMEVKLMQLQLRADQEARKRAALKGTLHAEREAATAELEALRLIIQRL
ESQKQERPPPCSDISEKKEEKRRRAEDKAAQEILQLTQELQTLQRENDDFSKERDELSAR
SLEQEKAQEECVHQAVSQASAALRVELDEERRKYQGLLREFTRLEQRYDNLREMSLLTER
TSGHRRTDSTQSLSFEPPSPTLLSPQSLTPLPLSPFPFAFPSPEEVRGVIGTSPCRERTL
SVCSSETTMDSLMEKMDVAKDPAVKMRGEDLAHAYDAVRVANKFLESQLRNQRSQWEEEL
EALRHQASSASSSASQPQELQELLEAREQECVRLRSELKELRNTVSLRRLLTQVFPSALS
AESSSCPSQQKPAAVSGLLECRKRDEAKLMKNLITDIRVDTALSLPPGLPAIVLSLCVRQ
ADCSRDQTHARSLCSTAVTAVKAALKKHNNNIDMTALWLKNVCVLHDLLTQHSPKQTLDS
TELAPLTSDLSDLIHALSDLCIQAYQQLLSITETRLQNIIVPAMLESETIPGLSGSAVKL
GASRKRAGSDPRTAAGVAPTIASVLRELGVLHAAMTHQALPAPLMEQAFHQLTYLISASA
LNSLLLRKDMCCWNRGMQIRYNVSLLEEWLRSRNLQAGGAVATLEPLIQAVQLLQTGKKT
EAEAQALVQTCSALSSQQIVKILTLYTPHSDLEERVSLNFIRTVQGLLKGRSDSQPPQLL
LDVRRVFPVTFLYSPPTGLHAEQLVIPDALKISFLRRV
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggcaacactggagctttacagtaagggggcaagtgtgtggattcctgattcggatgca
gtctgggtttcagcccaactcctccaggactacgctcctggagagaaacatctgctgctg
cagctctctaatggaaaggagatgcattacccagtgggctctcctgctgatctcccaccg
ttggggaaccccgacatcctggagggggaaaacgatctcacggctctcagcttcctccat
gagccggctgtcctgcacaacctgcgggttcgattcctggactacagcagcatctacacg
tactgtggtatcgtcttagtggccatcaatccctatgaccagctccacatctacggagag
gaggtgatcgatgcttacagtggtcaggacatggccgacatggaacctcacatcttttca
gtggcagaggaggcctaccgcaccatgaccagggaggagaaaaaccagtcgatcatcatc
agtggggagtcaggatcaggaaaaactgtctcagccaaattcaccatgagatactttgct
gtggtcggaggagcagcccagcagaccagtgtggaggagagagtcttggcttctaacccc
atcatggagtccattgggaatgctaaaaccactcgaaatgacaacagcagtcgttttggg
aaatacattgagatcggcttcggtagaaagggcgacattatcggtgctaaaatgaggacg
tatctactggagaagtcacgggtcgtcttccaggcttcttcagagaggaactaccacatc
ttctaccagctgtgtgcctccagagagctgcctgaaatgagatccctcaaactggatgca
cctgagaatttccgctacaccaatcagggaggagagatgcagattcctggtgctgatgat
gtgtcagacctggagcgcactcgcaatgctttcaccatcctgggtgttcagcctggccag
cagatggagctcttcaggatcctctcagctattctacacctgggaaatgccaacatccaa
gccagtgggagaagttctgataagagttatattgatgcagatgaccgctccctggccgtc
ttctccaagctacttggagttgagggacctcaaatggctcactggctgtgtcatcgcagg
ctggctgtagggggagagatgctggtcaaaccgaggtctgggcagcaggccgtagtggcc
agagatgctctggctaaacacatctacggccagttgttcacatggaccgtccagagactt
aactctgccctgcgctcccagaggggacagaccagatcattcataggggtactagatatc
tatgggtttgagacctttgatcggaacagttttgagcagttctgtataaattatgcaaac
gagaagctccagcagcagtttaacaggcacgtgttccacttggagcaggaggagtatgtc
cgggaggagctgccctggagcaagattgaattcagtgacaatcagcagtgcatcaacctc
gtcgagggacaactgggcctgtttgatctgttagatgaggagtgcaggatgcctaaaggc
tcagacgagagctgggtgcggaagctgtacgaccaacacctgaccagcaagccccaccct
cacttccagaaacctcgcatgtcaaacagcgccttcatcgttctgcactttgctgacctg
gtgcagtatgaatgtgaaggatttttagacaagaatcgagacacagtctatgaggagctt
gttaatatcatgaaagcgagtcagtctgagcttgtggccgagttgtttcagcagcaggag
aacgtgtcctctgtggccaatgggagtgttcgctcagggaaaagagcgaccagagagcac
agactgactgtgggcttccagttccgtcagtccctacagatgctgatggacaccctcaac
agcaccacccctcactacgtccgctgcatcaaacccaacgacctcaaagagccgttcatg
tttgaccccaagaggacagtgcaacagctgagagcctgtggggtgctggagaccattcgt
atcagtgctgcaggttttccttccagatggacgtacgaggagttcttcagcaggtaccgc
gttcttcttcgagggcctcagagtctggagcaggcgcaagcctcgtgtcgacggactctg
cctcagatcatctcagacccggaccagtactgctttggaaagaccaaggtctttttcagg
gccggtcaggtggctctcctggagaggctgagggctgagaggctgcgtgaggctgctgtg
gtcatccagagccgggttagaggatggctgtcacggatcagattcaccagggtcctctgg
gcaactgtcatcatacagagatacagcagaggagctctggccagacgactggccctgacc
ctgcgctacaccaaggctgccttagtgatccagaagatgtaccgcatggtggtggtccga
cagctgttcctcatgatccgccaagccactgtcaccatccaggccttcaccaggggcaca
ctggcacgccgcacatacagacagttggttgcagaacgtgccactgtgttgcttcaggcg
agagtgcgtgggtggttggcgaggcgggcgtacaggcgagtgcgtgcggcggtggtgttc
atgcagtgctgcgtgcgccgcagggctgccaggagaaggctgctgaaactgaagaccgag
gcccgctctgtggagaagtaccgagagctcaacaagggcatggaggtcaaactgatgcag
ctgcagctacgagccgaccaggaggccagaaagagggctgctctgaaagggaccctgcat
gcagagcgagaggccgccactgctgagctggaggctctgaggctgatcatacagagactg
gagagccagaaacaggagaggcctccgccctgctcagacatcagtgagaagaaggaagag
aagaggaggagagccgaggacaaagctgctcaggagatcctgcagctcacacaagagttg
caaacgctgcagagagaaaatgatgattttagcaaagagagagacgaactctctgctcgc
tcacttgaacaagaaaaagctcaagaagagtgtgtccatcaggctgtgtcccaggcgagt
gcggctctgagggtggagctggatgaagagaggagaaagtaccagggcctcctgagagag
ttcacccgactggagcagagatacgacaacctcagagagatgagtctgctcactgagcgc
accagtggccacaggaggacagactccacccagagtctgagctttgagcctccctcaccc
accctgctgtcaccccagtccctcacccctctccccctgtcaccattcccgtttgccttc
ccctctcctgaggaggtgcgcggggtcattgggacgtctccctgccgggagaggacactc
tctgtgtgtagctcagaaacaacaatggactcgttgatggagaagatggatgtggccaaa
gacccggcggtgaagatgagaggagaggacctggcacacgcctacgacgccgtacgagtg
gccaacaagttcctggagagtcagctgcgtaaccagcgcagtcagtgggaggaggagctg
gaggctctgaggcatcaagcatcctctgcttcttcctctgcatcacagccacaggagctg
caggagctgctggaggccagagagcaagagtgtgtcagactgaggagtgagctgaaggag
ctgagaaacaccgtgtcactcagacgactcctcactcaagtttttccgtcagctttgagc
gcagagagctcgtcctgtccgtcccaacagaagccagcagcagtctctggtctgctggag
tgtaggaagagagacgaagcaaagctcatgaagaacctcatcacagacatccgtgtggac
actgccctgtccctgcctcccggtctccctgccatcgtgctttccctgtgtgtccgccag
gccgactgcagcagggaccagactcacgctcgctcgctctgtagcactgctgtcactgct
gtgaaggcagctctgaagaaacataacaacaatatagacatgacagctctgtggctgaag
aatgtttgtgtgttgcacgacctgctgacccagcactccccaaaacagacccttgattca
actgaactggctccactgacgagcgacctgagcgacctgattcacgccctgagcgacctc
tgcatccaggcctatcagcagctcctctccatcactgagacacgcctgcagaacatcata
gtccccgccatgctggagtctgagaccatccctggtctctctggctcagctgtgaagttg
ggtgcatccaggaagcgagccggctcggaccccaggactgcagcaggtgttgctcccacc
atagcgtcggtgctgagggagctgggagtccttcacgctgccatgacccatcaggctctg
cccgcaccactgatggaacaggcctttcaccagctcacctacctcatctccgcttccgct
ctgaacagcctgctgctgcggaaggacatgtgctgctggaatcgtggcatgcaaatacgc
tacaatgtgagcctgttggaggagtggctgcgtagccgtaatctgcaggcagggggcgct
gtggccacgctggagcctctgatccaggcagttcagcttctgcagactgggaaaaaaact
gaggcggaggcacaggccctagttcagacctgcagtgcactgtccagccagcagatagtg
aagattctgaccctctacactcctcacagtgaccttgaagaaagagtctcactgaatttc
atccgtactgtccaggggcttctgaaaggccgctctgactcgcagcctccgcagctctta
ctggatgtgaggcgagtgtttcctgtcactttcctctactcgcctcccaccgggctccac
gctgagcagttagtcatcccagacgccctcaagatttcctttctacgcagagtctag
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integrated database retrieval system
