Hippoglossus hippoglossus (Atlantic halibut): 117759854
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Entry
117759854 CDS
T07778
Symbol
vcam1b
Name
(RefSeq) LOW QUALITY PROTEIN: vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117759854 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hhip04515
]
117759854 (vcam1b)
04090 CD molecules [BR:
hhip04090
]
117759854 (vcam1b)
04091 Lectins [BR:
hhip04091
]
117759854 (vcam1b)
Cell adhesion molecules [BR:
hhip04515
]
Immunoglobulin superfamily
VCAM
117759854 (vcam1b)
CD molecules [BR:
hhip04090
]
Proteins
117759854 (vcam1b)
Lectins [BR:
hhip04091
]
I-type lectins (Siglecs)
117759854 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
C2-set_2
Ig_C17orf99
C1-set
Ig_5
ICAM1_3_5_D2
ICAM_N
REJ
Motif
Other DBs
NCBI-GeneID:
117759854
NCBI-ProteinID:
XP_034438208
LinkDB
All DBs
Position
4:complement(28331606..28340851)
Genome browser
AA seq
816 aa
AA seq
DB search
MCVSCVCSFFQIISAALLMSSWCVQGLRVDVFPRQPLFRLAERRQLVCSVQDCPIMPRIS
WSMLEDRPLTAAVTTNTSCSVLTFDPVMMEHEGALLCTVNCGRDRKLILTNVQVYSLPSA
PLIRGQDHLRRGVESTLTCQVSDLYPSELLNLTWYNGDRVVQSVVGEPGSSLVSSEYRFT
PQDQDSGANISCRATLNLLKLPPKIRTRETTICLNLLHAPVVTLISDSLLVMVNSSLTVS
CSVVGNPEPTITWSFRTTDGRSLLRGRGHQLVVKAVSLFDAGRYECEARNSEGNQTAAVD
VTVHAPPTNTSISVSPGEDVVEGQQVNITCRSDGSPPTTLVLTRDWAELQRTDPASSSSL
SFSLSTSLLRDSAHYKCEASNQYGAQQVSSSIRVKAHPLQVEVSHQVLAAERGSDLLVTC
RASGCLHPPTLTWKRAEQDRSVLQRTQQQDGLSPLHLRDLDLQDQGGYSCEAECDTVIRT
RTIQVHRFPSDPVLMNPGPILLGQQAVLRCDVINVFSTNPMRIHWLLGKTALMSESFXFY
GSLQNVSSVLHHLVEARARLXPAEAELLTDDSDLWRSRRTSVRLQVHYAPRRTSISVSPE
EDVVEGQQVNITCSSDGAPPSTLVLRRDGAELQRMDAASSSSLFLSLSSALLEDSAYYQC
EASNPYGAQLVSSSVRVKASPRNTTVLVLPSTVVHEGQNVTVCCQTISFPPSAMTLRKLT
NGMELFSLNGTFLLVNVTARDSGLYQVNVTNDLGYQVKVFSISVRERSSDLHPRLSVVIV
TVVIFAAAAVSLLLDFLRRFRKRGFYSLSRSAPPSA
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtatcatgtgtgtgcagcttctttcagatcatctcagctgcgttgctgatgtca
tcgtggtgcgttcagggtctgcgggtcgatgtgtttcccagacagcctctgttcagactg
gcggagcgtcggcagctggtttgctccgttcaggattgtccaattatgccgcgcatctcc
tggtctatgctcgaggatcgacctctgaccgccgcggtcaccaccaacaccagctgctct
gtgttgacctttgaccctgtgatgatggagcatgagggtgctctgctgtgcacagtcaac
tgtggaagagacaggaagctgatcctaaccaacgtgcaggtttactccctcccatcagcc
cctctgatccgaggccaggaccacttgagacggggggtggagtccaccctgacctgtcag
gtgtccgacctttacccctcagagctgctcaacctcacctggtataacggtgacagagtc
gtgcagagtgtggtcggagagcccgggtccagcttggtctcgtctgagtacaggttcact
cctcaggaccaggactcgggggccaacatcagctgcagggccacgctgaaccttctgaag
ctgccacctaagatccggaccagagagaccacgatctgcctcaacctgctccatgctcct
gtcgtgacgttgatctcggactcgttgctggtcatggtcaactcttcgctcactgtcagc
tgttcagtggtgggaaaccccgagccgacaatcacctggagcttcaggacgacagacggt
cggtcgcttttgcgggggcgtggccatcagctcgtcgtcaaggcggtgagtctgtttgac
gctggacgctacgagtgtgaggcccgaaacagtgagggaaaccagaccgctgcggtggac
gtcactgttcatgctccacccaccaacacctccatatccgtgagtcccggtgaggacgtg
gtggagggtcaacaggtcaacattacctgccgatcagacggatctccgcccaccacgctg
gtgctgacgagggattgggcagagcttcagaggactgaccccgcctcatcttcctcactc
tccttcagcctctctacatccttgctgcgagactccgcccactacaagtgtgaagcgtcc
aatcagtacggagcacagcaggtgtccagctccatcagggtcaaagctcaccctctgcag
gtggaggtgagtcatcaggtcttggctgcagagcgaggttcagatctgctcgtcacctgc
agagcgtccgggtgtctccaccccccaaccctcacctggaagagggcagagcaggaccgt
agcgtcctccagaggacgcagcagcaggacggtctgtccccgctccacctgcgggacctt
gacctccaggatcagggaggctacagctgtgaggccgagtgtgacaccgttatcaggacc
agaaccatccaggtccaccgttttccatctgatccggttctgatgaatcctggtcccatc
ctgttgggtcagcaggccgtccttcgctgtgatgtcattaatgtcttttcaaccaatccc
atgaggatccactggctgttggggaaaactgctctgatgtcagagtcctttnggttctac
ggttctttacagaatgtctcatctgttcttcatcacctggtggaggcgagagcaaggttg
tgacctgcagaagcggagctgctgactgatgacagtgacctgtggcggtccaggaggacg
agtgtccgtctgcaagtccactacgctccgaggagaacctccatctctgtgagtcccgag
gaggacgtggtggagggtcaacaggtgaacattacctgcagctccgacggagctccgccc
agcacgctggtgctgaggagggatggggcggagcttcagagaatggatgctgcctcctca
tcctcactcttcctcagcctgtcttctgccttgctggaagactccgcctactaccagtgt
gaagcgtccaatccgtacggagcacagctggtgtccagctctgtcagggtcaaagcttct
cccagaaacacaacagtcctcgtcctgccgtccactgtcgtccacgaggggcaaaacgtc
accgtctgctgtcaaactatcagcttccctccgtcggccatgactctgaggaaactgacc
aatgggatggagctattttccctcaacggcaccttcctattggtcaacgtcacggccaga
gactctggattgtaccaggtcaacgtgaccaacgacctcggataccaggtcaaagttttc
agcatcagtgtcagagagagaagcagtgatcttcatcctcgtctcagtgtcgtcatcgtc
acggtcgtgatattcgctgcagctgctgtttctctgctgctcgacttcctgaggagattc
aggaagagaggtttctattcgctgagccgctcggctccgccctccgcctga
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