Hippoglossus hippoglossus (Atlantic halibut): 117760248
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Entry
117760248 CDS
T07778
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04010
MAPK signaling pathway
hhip04020
Calcium signaling pathway
hhip04144
Endocytosis
hhip04510
Focal adhesion
hhip04540
Gap junction
hhip04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117760248 (pdgfra)
04020 Calcium signaling pathway
117760248 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117760248 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117760248 (pdgfra)
04540 Gap junction
117760248 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
117760248 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hhip01001
]
117760248 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
hhip04090
]
117760248 (pdgfra)
Enzymes [BR:
hhip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
117760248 (pdgfra)
Protein kinases [BR:
hhip01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
117760248 (pdgfra)
CD molecules [BR:
hhip04090
]
Proteins
117760248 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
C2-set_2
Motif
Other DBs
NCBI-GeneID:
117760248
NCBI-ProteinID:
XP_034439008
LinkDB
All DBs
Position
4:7206077..7224793
Genome browser
AA seq
1471 aa
AA seq
DB search
MDGVKAYVVCWGILVLLVAVTCGLSPPTIVSNEEEFVLHPNSVFNISCTGKRNVVWAEPL
PTNTFVYPGYYTATLFIYNATVENTGYYICVYESHEGEVESEPDEDNEAGIYVFVPDPQA
PFVPETPEKVEVPMDPTGVPISCRVSDPYTDVILRSVPTGEEMLAYYDNKMGFFGNLSPG
QYQCETTVNGQTARSVVYTVRVEAPADMEDFTVEVKASEESVRAGQPFNITCIAPAGLGF
QQQWLHPKKQAVGAVQMKQTSPDQVIYILSIPQATAQDSGSYECSITHENSGEVRASSVA
VTVFEDNSFVALDHSGILVTEFVSLLEETEFTILINAYPSPKVMWLKDSKELLVNYYVLT
KTSHNEGNRYQSILTLRQPLEKDNGNYTITVLSGSRTAKFSFNLKVKAPTAMMFPPSSAP
VLLPQIDEMVVPLHTPFTLTCRGEAKLAWETPLNVLGLSQEDNSGLFVSTITVDGATAVH
TGYYTCFYSRNTTEDMDDSSIYIYVPDPDVPFVPSPVPFGNHVLSDHEEMEIQCRVSDPT
ANVTLVNVDTQQPVSSVYDSKRGALGVFTAGTYVCKALINGEEHYSGEYIVHGWTGGAEL
HVELTAKRTALLVGETIAVTCLARGSEILEDHWKYPGKLTNRASKTVHENKRDQEILYTL
TIPQATTKDSGIYSCSITDIISNESQTKQLAIRVFGSEFLSIRPQFGEYESAELDEVREF
RAEINSFPTAHVTWHKDGVPLSDVTAEISTSLRQLSETSYMSVLTLIRAKEEDSGNYTIR
VENGNQSRDVSLILEVKVPAVIVELMDIHHGSATGQSVVCITRGQPTPVVEWFICKNIKH
CANDSSSWVPLSTNSTKITVESRMDEDNNLESQVMFGHLENTLAVRCLAKNEMAAVSREV
KLVSNGPHPELTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIY
VDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR
SSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRESFM
ALNPEKSKKEMDIFGINPADESSRSYVILSFESKADYMDMKQGDNTQYVPMLEMGMTPKY
SDIQSSNYDQPPSQKDSSEGDMDDLLSDDMNEGLTTTDLLSFTYQVAKGMEFLSSKNCVH
RDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTSLS
DVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPHDVYEMMMKCWNSE
PEKRPTFLGLSDSVASLLPCSYKRHYERVNQEFLKSDHPAVTRVCVENDDAYIGITYKNQ
GKLKDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHSSQTSEESAIETGSSSST
FNKREGETLEDITLLDEMCLDCSDLVEDSFL
NT seq
4416 nt
NT seq
+upstream
nt +downstream
nt
atggacggggtgaaggcgtatgtcgtctgttggggtattttggtgcttcttgttgcagtc
acctgtggactgtcaccacccaccattgtgtccaatgaggaggagttcgtcctgcacccc
aactctgtgttcaacatcagctgcacaggcaaaagaaacgttgtctgggccgaacccctg
ccgacaaacacttttgtttatccaggatactacactgccacgctcttcatttacaacgcc
acagtagaaaacaccggctactacatctgtgtgtatgaaagccatgagggcgaagtggag
agtgagccagacgaagacaatgaggcaggaatatatgtctttgtgccagatccccaggcc
ccatttgttccagagaccccagaaaaagtggaagtccccatggacccgacaggagtcccc
atctcctgccgcgtgtctgacccgtacacagacgtcatcctccggagcgtccccactgga
gaggagatgctcgcctactacgacaacaagatgggcttcttcgggaacctctctcctggg
cagtaccagtgtgaaaccacggtgaacggccagacagccagaagtgtagtttacactgtg
agagttgaagcccctgcagacatggaggatttcacagtggaagtaaaagccagcgaggag
agcgtgagggccgggcagcctttcaacatcacctgcatcgctcccgctgggctgggcttt
cagcagcagtggctccatcccaaaaaacaggctgtgggcgcagttcagatgaaacagacg
tcacctgaccaggtcatctacatcctcagtatcccacaagccactgctcaggacagcggc
agctacgagtgctccatcactcacgaaaacagcggggaggtcagggcgagcagcgtggcc
gtcactgtcttcgaggacaattctttcgtggctctggaccacagcggaattctggtgacg
gagttcgtcagcctcttggaggagacagagtttactattctcatcaatgcctacccttcc
cccaaagtgatgtggctgaaagacagcaaagaattactagtgaactactatgtcctcacc
aagacaagccacaatgaagggaatcggtatcaaagcattctgacattacgacagcctctg
gagaaagacaacggcaactataccatcacagtgctgagtggctctcgcactgcaaagttc
tcctttaacctcaaagtgaaagctcccactgcgatgatgttccctccgtcctccgcccct
gtgctgctgccacagatagatgagatggtggtgcccctccacactcctttcaccttgacc
tgccgcggagaggcaaagctggcctgggagacgccactcaatgtgctggggctgtcgcag
gaggacaacagcggcctgtttgtctccaccatcactgtggatggtgccaccgcagtgcac
actggctactacacgtgcttctacagcagaaacaccactgaggacatggatgacagcagc
atctatatctatgtcccagatccagacgttccctttgtgccatcaccggtgccctttggt
aaccacgtcctgtccgaccacgaggagatggagatccagtgccgagtgtctgatcccact
gctaacgtgaccctggttaatgttgacacccagcagcctgtgtctagtgtttatgacagc
aagaggggcgctttgggggtattcactgctggaacctacgtttgtaaggccctcataaac
ggagaggaacactacagcggggaatacatcgtccacggctggacaggtggtgccgagcta
catgtcgagctgacagccaagcggactgctctgctggtgggagaaaccatcgcagtcacc
tgtctggcccggggatctgagattctggaagaccactggaaataccctggcaaactgact
aatcgtgcttcaaaaaccgtgcatgaaaacaagagggatcaggagatcctttacaccctg
acgatcccgcaggctacgaccaaagacagcggcatctattcttgctccatcactgatatt
attagtaatgagagccagacaaagcaactcgctataagagtttttggaagtgagtttttg
tccatcaggccacagtttggagaatatgagtcagcagagttggatgaggtccgggagttc
agggccgaaatcaactccttccccactgctcacgtcacgtggcacaaagatggagtcccg
ctcagcgacgtgacggcggagatctccaccagcctgcggcagctcagcgagaccagctac
atgagcgttctcaccctgatccgcgccaaagaggaggacagcgggaactacacgatccga
gtggagaatggaaaccaaagtcgggacgttagcttgatcctggaggtcaaagtgcctgca
gtcattgtggagctgatggacatccaccacggctcagccacaggccagtctgtggtgtgt
attacacgagggcagcccactcctgtggtggagtggttcatctgcaagaacatcaaacat
tgtgccaatgactcgtcctcctgggtgccgctctccaccaactccaccaagatcacggtg
gagtcccgaatggacgaggacaacaacctggagagccaggtcatgtttggtcacctggag
aacacgctggcggtgcgctgcctggccaagaacgaaatggctgccgtcagcagggaggtc
aaactggtgtccaacggccctcaccctgagctgactgtagctgctgctgtgctggtgctc
ctggtcattgtcatcatctcactcattgtcttggtcattatttggaaacagaaacctcgg
tatgagatccgctggagggtcatagagtctgtgagcccagatggccacgagtacatctac
gtggatcccatgcagcttccctatgactccagatgggagttcccccgcgacagactcgtg
ctcggtcgtatcctgggttctggagcctttgggaaggtagtggagggcaccgcctacgga
ctgagccgctcccaacccgtcatgaaggtggcagtgaaaatgctgaaacccactgcacgc
tccagtgagaaacaagccctgatgtctgaactgaagattatgactcatctcggtcctcat
ctcaacattgttaacctcctgggagcatgcaccaagtcaggccccatctacatcatcaca
gagtactgcttctacggggacctggtcaactacctgcacaagaacagagagagcttcatg
gccctgaacccggagaaaagtaaaaaagagatggacatcttcgggatcaaccctgcagat
gagagcagcaggagttatgtgatcctgtcctttgagagcaaagcagactacatggacatg
aagcaaggggataacactcagtacgtgcccatgctggagatgggcatgacccccaaatac
tccgacatccagtcatccaactacgaccaaccaccctcgcagaaagactcgagtgagggt
gacatggacgacctgttgtcggacgacatgaacgagggcctcaccaccaccgacctgctc
agcttcacctaccaggtggccaaaggcatggagttcctgtcctccaaaaactgtgtgcat
cgagacctcgcagccaggaatgtcctcctctctcagggcaagatcgtgaagatctgtgac
ttcggactggccagagacatcatgcatgacaacaactatgtctccaaaggcagcactttt
ctgcccgtgaagtggatggcaccagagagtatttttgacaacctctacacgtccctcagc
gatgtttggtcctacggcatcctcctctgggagatattctccttaggtggcaccccttac
ccggggatggtcgtggattccagcttctacaacaagatcaagagtggatacaggatgtcc
aagcctgaacatgcgcctcatgacgtgtatgaaatgatgatgaagtgctggaacagcgag
ccagagaagaggcctactttcctgggtctgagtgacagtgtagcgtctttgctgccctgc
agctacaagcggcattatgagagggtaaaccaggagttcctgaagagtgaccaccccgcc
gtgactcgggtgtgcgttgagaacgacgacgcctacatcggcatcacctacaagaaccag
ggcaagctgaaggaccgggagagtggcttcgacgagcagcggctgagctccgacagcggc
tacattattcctctccccgacctggaccctatatctgatgatgaatatggaaagaggaac
agacacagctctcagacatccgaggagagcgccattgagaccggctccagcagctccact
tttaataagcgggagggggagaccctggaggacatcacgctgctggacgagatgtgtctg
gactgtagtgacctggtagaggacagctttctgtga
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