Hippoglossus hippoglossus (Atlantic halibut): 117760293
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Entry
117760293 CDS
T07778
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04136
Autophagy - other
hhip04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117760293 (atg4b)
04136 Autophagy - other
117760293 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hhip01002
]
117760293 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117760293 (atg4b)
03029 Mitochondrial biogenesis [BR:
hhip03029
]
117760293 (atg4b)
Peptidases and inhibitors [BR:
hhip01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
117760293 (atg4b)
Membrane trafficking [BR:
hhip04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
117760293 (atg4b)
Mitochondrial biogenesis [BR:
hhip03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117760293 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Dysbindin
Motif
Other DBs
NCBI-GeneID:
117760293
NCBI-ProteinID:
XP_034439100
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All DBs
Position
4:4729621..4737962
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AA seq
399 aa
AA seq
DB search
MDAATLTYDTLRFGEFEDFPETSEPVWILGKEYNALTEKDDILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALLCRHLGRNWRWTRDEKQREEYISILNAFIDKKD
SYYSIHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVVIEEIK
RLCMPWLDAAEACGEAEAVGDLNGCLEGACALAEEETALWRPLVLLIPLRLGLSDINEAY
IETLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVDPCEDSQVPDETY
HCQHPPCRMHICELDPSIAAGFFCRTEDEFDDWCMRIRRLSCRRGGLPMFELVDSQPCHM
VSMDALNLTPDAPFTDFSDSDRLERFFDSEDEEFEILSL
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagcaaccttgacatatgacacacttcgctttggagagtttgaagattttcct
gagacctcagagcctgtgtggatcttgggcaaagaatacaatgcactcacagagaaagat
gacattttatcagatgtcacttcacgactgtggttcacatacagaaaaaacttcccgccg
attggtgggacaggaccaacgtcagatacaggatgggggtgtatgttacgatgcggccag
atgatcctcggcgaggccttgttgtgccgacatttaggcagaaactggagatggaccaga
gacgagaaacaaagagaagagtacatcagtattctcaacgccttcattgacaaaaaagac
agctattattccatccatcaaattgcccaaatgggggttggagaggggaagccaataggc
cagtggtatggaccaaacacagtcgcccaggttctaaagaaactggcagtgtttgatacg
tggagcagattagttgtacacgtggcaatggacaacactgtggtcatcgaggagatcaag
cggctctgtatgccctggctggatgcggcagaggcctgtggagaggccgaggcagtgggg
gatctgaatggctgcctcgagggtgcgtgtgcgctggctgaggaggagacggctctgtgg
agacccctggtcctgctcatccccctcaggctgggcctgagtgatataaacgaggcctat
attgaaaccctcaagcaatgcttcatgctgcctcagtccttgggtgttattggggggaaa
cccaacagtgcccattacttcattggttatgtcggagaagaactcatctacttagaccca
cacaccacacagcctgcagtggatccgtgtgaagacagccaggtccccgatgagacgtac
cattgtcagcacccaccctgccgcatgcacatctgtgaactggacccatccattgcagcg
ggtttcttctgcagaacagaggacgagtttgatgactggtgtatgcgcataagaaggctg
tcctgcagaagaggaggcctgcccatgtttgaactcgtagacagtcagccctgtcacatg
gtcagcatggatgccctgaacctcactcctgacgctcccttcacagatttctcagactct
gacaggttggagcggttctttgactcagaagacgaagagtttgagatcctttccctgtga
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