Hippoglossus hippoglossus (Atlantic halibut): 117760475
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Entry
117760475 CDS
T07778
Name
(RefSeq) pre-mRNA-splicing factor 38A isoform X1
KO
K12849
pre-mRNA-splicing factor 38A
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117760475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117760475
Spliceosome [BR:
hhip03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117760475
Complex C
U4/U6.U5 tri-SnRNP related factors
117760475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
117760475
NCBI-ProteinID:
XP_034439421
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All DBs
Position
4:complement(27581624..27585112)
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AA seq
315 aa
AA seq
DB search
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV
YGGNIKPTPFLCLALKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTAADCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQRRQVLEEAEMLDPR
ISALEEDLDEVETSDEEDEEEDKQQQQERLQTPEPHRRSYRDNDRPRRSPSPRYRRSRSP
RRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSKSPGQKTRHHRSHRHRSHSKSP
ERSSKKSHKKSRRNE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgaaccgtgaaggatgccaacagcatccacgggacgaacccacagtacctg
gtggagaaaatcatccgaacccgaatctacgagtccaaatactggaaggaggaatgcttc
ggcctcaccgccgagctggttgttgacaaagccatggagctgaagttcgttggaggagtt
tatggcggaaacatcaagcccacccccttcctttgcctcgcgctgaagatgctgcagatt
cagccggagaaagacatcatcgtcgagttcataaaaaatgaggatttcaaatatgttcgt
ctccttggagccatgtacatgagactgacgggcactgcagcggattgttacaaatacctg
gagcctttgtacaacgactacagaaagatcaagagtcagaacagaaacggagagtttgag
ttgatgcacgttgacgagtttatcgacgagcttcttcacgcagagaggatgtgtgacatc
atcctgccccggcttcagaggagacaagtcctcgaggaggcggagatgttggacccgcgc
atcagcgctctggaggaagacctggatgaagtggagaccagtgacgaggaagatgaggaa
gaagacaagcagcagcagcaggagagactccagacccctgaaccacacagacgtagttac
cgtgacaacgacaggcctcgtcgctccccatcacctcgctacagacgcagccgctccccc
agacggaggagccgatctccgaagaggcggagcccctccccccggagagagcgccatcgc
agcaagagcccccgcagacaccgcagccggtcccgggaccggcgccaccgctccaaatcc
ccaggtcagaaaacacgtcatcacagaagccaccgacatcgcagccactcaaagtctcca
gagaggagttcaaaaaagagtcacaagaagagtcggagaaacgagtga
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