Hippoglossus hippoglossus (Atlantic halibut): 117760710
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Entry
117760710 CDS
T07778
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03013
Nucleocytoplasmic transport
hhip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117760710 (upf1)
03015 mRNA surveillance pathway
117760710 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117760710 (upf1)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117760710 (upf1)
5.6.2.5 RNA 5'-3' helicase
117760710 (upf1)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117760710 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
117760710 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
117760710
NCBI-ProteinID:
XP_034439840
LinkDB
All DBs
Position
4:19714128..19726772
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEALLNGGVEDSVAKASQLLTELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPMWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSMYFQTHDQIGMIGAGPGHMAA
LNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSGNQGTGQGNGPN
SQVSQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagaccctcaccttcttggacaccgaggaa
gcggagcttctcggagcggacacccagggctccgagtacgatttcaccgacttcacgcta
cccagccagacgcagacccaaggccagacccagagccagctggacggccaggtcaatggt
cctgatgaggctctcctgaacggtggagtggaggactccgtggccaaagccagtcagctg
ctgaccgagctcaacttcgaggaggatgaggaggacacgtactacaccaaagacctgccc
gtgcacgcatgcagctactgtggtatccatgatccagcatgtgtggtgtactgcaacacc
agcaagaagtggttctgtaatggacgtggcaacacatctggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgactctgcataaagatgggccactgggagagacg
gtgctggagtgttacaactgcggctgtcgaaatgtcttcctgctgggcttcatcccggcc
aaagctgattccgtggtggtgttactctgcaggcagccctgtgctagccagagtagctta
aaagacatcaactgggacagctcgcagtggcaaccactgatccaggatcgttgctttctg
tcctggctggtgaagatcccctcggagcaggagcagcttcgggcacgccagatcaccgcc
cagcagatcaacaagcttgaggagctctggaaggacaatcccaccgccaccttggaggac
ttggagaaaccgggcgtggatgaggaaccccagcatgtgctgctgcggtacgaggacgcc
taccagtaccaaaacatctttggcccgctggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctgggtctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcag
ggtgatgaaatctgcctgcgatacaaaggagatctggccccgatgtggaaaggcattggt
catgtcatcaaagtccctgacaactatggagatgaaattgccatcgagttgcggagcagc
gttggagcacctgtggaaatcccccacaacttccaagtggactttgtgtggaagtcaact
tcctttgacaggatgcaaagcgccctgaagacgtttgcagtggatgagacttctgtgtct
ggttacatttaccacaaactgctgggccatgaggtggaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgctcagggcctgcctgacctcaatcactcacaggtgtatgct
gtgaagacggtgctgcagaggcctctcagtctaattcagggtcctcccggcaccggaaag
actgtcacctctgccactattgtttaccacctgtcccgacagggcaatggcccagttctg
gtgtgtgctcccagtaacatcgctgtggaccagttgaccgagaagattgacaagactgga
ctaaaggtcgtcaggctgtgcgccaagagccgtgaggccatcgagtcacccgtgtctttt
ctggctctgcacaaccagatcagcaacatggacagtatgcctgagctacagaagctgcaa
cagctgaaggatgagactggtgagctgtcgtctgctgatgagaaacgctacagggctttg
aagcgcaccgctgagagggagctgctcatgaatgctgatgtgatctgctgcacctgtgtc
ggggctggagacccccgcctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccactgagccggagtgtatggtgcccgtggtgttgggagccaagcagctcatt
ctggtgggcgaccactgccagctgggtcctgtagtgatgtgtaagaaggcagctaaggca
ggtctgtcccagtccttgtttgagcgcttggtggttctgggcatccgaccaatccgcctg
caggtccagtaccgcatgcaccctgccctcagtgccttcccttccaacattttctacgag
ggctccctgcagaatggcgtcaccgcagctgaccgcattaagaagggcttcgacttccag
tggccacagccggacaagcccatgttcttttacgtgactcagggccaggaggagatagcc
agctctggaacctcctacctcaacaggaccgaggctgccaatgtggagaagatcaccacc
aggctgctgaaggctggagccaaacccgaccaaatcggcattatcaccccatacgagggt
cagcgctcttacctggtccagtacatgcagttcagtggctccctgcacaccaaactctat
cagcaagtggaaattgccagcgtggatgccttccagggcagagagaaggacttcatcatt
ctctcctgcgtccgtgccaatgagcatcagggcatcggcttcctgaatgaccctcgtcgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcattgtggggaacccgaaggcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaggtcctg
gtggaggggcccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaag
ctggtcaacaccatcaaccctggtgggcgttttatgagcactgcgatgtatgatgcccga
gaggccctcatccctggctccgcctacgaccgcagcaatgctgccggacgtccgtccatg
tactttcaaactcatgaccagatcgggatgattggggccggccccggtcacatggccgcc
ctgaatatccccatacccttcaacctggtgatgcctcctatgcctccacccagctacttg
ggtcagaccaacggccccgctgcaggtcgtggggctatgaagggtaagcctgggcgtggc
gggcggcagagggtccgtggctctgggaaccagggcaccggtcagggtaatggaccaaac
agccaggtcagccaggatggggcctcccagtccttctcccaggggccactgacacaaggc
tacatatccatgagccagccctctcagatgagccagcctggcctttcccagccagagctc
tcccaggatagctacctgggagatgagttcaagtcccaaattgacgtggctctgtcccag
gactcaacttaccagggtgaacgtgcgtatcagcatggcggagtgactggactgtcacag
tattaa
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