Hippoglossus hippoglossus (Atlantic halibut): 117760715
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Entry
117760715 CDS
T07778
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117760715 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
117760715 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117760715 (lsm4)
03041 Spliceosome [BR:
hhip03041
]
117760715 (lsm4)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117760715 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
117760715 (lsm4)
Spliceosome [BR:
hhip03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117760715 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117760715
NCBI-ProteinID:
XP_034439847
LinkDB
All DBs
Position
4:complement(19699671..19702575)
Genome browser
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGAGRGLFGGRGRGLSG
PGRGQQQQLQLPQQQDKKAGKPQGMKNQH
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctctctgctgaagactgcccagaaccacccgatgctggtggagctgaaa
aacggggagacgtataacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagttatctgcacctcaagggatggagataagttctggaggatgcctgagtgctac
atcagaggaagcaccatcaagtatctgcgaatcccagacgagatcattgacatggtgaag
gaggaggtggtgtccaagggccgcggacgtggaggtgcccagcagaacaaacagcagggc
aaaggaaggggaggagctggccgaggtctgtttggtggtcgtggcagaggattgagcggt
cccggtcggggccagcagcagcagctacaactaccgcagcagcaggataagaaagcaggc
aaaccacagggaatgaagaaccagcactga
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