Hippoglossus hippoglossus (Atlantic halibut): 117761321
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Entry
117761321 CDS
T07778
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03020
RNA polymerase
hhip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117761321 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
117761321 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117761321 (polr2b)
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117761321 (polr2b)
Enzymes [BR:
hhip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117761321 (polr2b)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117761321 (polr2b)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117761321 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
117761321
NCBI-ProteinID:
XP_034440982
LinkDB
All DBs
Position
5:complement(40605..51173)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDPQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAREVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaggacgaagatcctcaatatgatgaagatgaagatgaaatcactccggat
ttgtggcaggaagcttgttggatcgtcatcagctcttattttgacgagaagggtctggtg
cggcagcagttggattccttcgacgagttcatccagatgtcggttcagaggatcgtggag
gatgctccgcccatcgacctgcaggctgaagctcagcacacatcgggggaggtggaggag
ccgcctcgttacctactgaagtttgagcagatctacctgtcgaagccgacgcactgggag
agagacggcgctccgtctcccatgatgcccaatgaagcccgactacgaaacctgacgtac
tccgcccctctgtatgtggacatcacaaagaccataataaaggagggggaggagcagctg
cagacgcaacaccagaaaactttcattggaaagattcccatcatgcttcgctccacctac
tgcctgctgagtggtctgacggatcgagatctgtgtgagctcaacgagtgtccgctcgac
cccggcgggtatttcatcatcaatggctccgagaaggtgctgattgctcaggagaagatg
gcgaccaacacagtgtacgtctttgccaagaaggactcgaagtacgcgtacacggccgag
tgtcgctcgtgtttggaaaactcgtctcgtcctaccagcaccatctgggtcagcatgatg
gcgagaggaggacagggagtgaagaagagcgccatcggtcagaggatcgtttccacgctg
ccgtacatcagacaggaagttcccatcattatcgtgtttcgagcgctgggcttcgtgtca
gacagagacatcctggaacacatcatctacgactttgacgacccagagatgatggagatg
gtcaagccgtctctcgatgaagcgtttgtgatccaggagcagaatgtggcgttgaacttt
attggttccagaggagcgaaacccggagtgacgaaagagagacgaatcaaatacgcaaga
gaagttctgcagaaagagatgctgccgcacgtcggcgtcagcgacttctgtgagaccaag
aaggcgtatttcttagggtacatggtccacaggttgctgctcgctgctcttggcagacgg
gagctagacgacagagatcactatggcaacaagaggctggacctcgctgggcctctattg
gcgtttctgttcagagggatgtttaagaatctgttgaaggaaatcagaatttacgctcag
aagttcatcgacagaggaaaagactttaacctggaactcgccattaaaaccagaatcata
tctgacggactcaaatattcactcgccactggaaactggggcgacgtcaagaaagctcat
caggccagagctggagtgtcacaggtgttgaaccgtttgacctttgcgtcgactctgtct
caccttcgtcgagtcaactctccgattggcagagatggaaaactggcgaaacctcgacaa
ctacacaacacactttgggggatggtttgtccggccgagacgccagagggtcacgctgtg
ggtctggtgaagaacttggccctcatggcctacatctctgtgggctctcagccgtctccc
atcctggagtttctggaggagtggagtatggagaaccttgaggagatctcacctgccgcc
atcgcagatgccactaagatctttgtcaatggctgctgggtcggaatccacaaagatcct
gaacagctgatgaacacactgaggaaactccgcagacagatggacatcattgtgtccgag
gtgtcgatgatcagagacatcagagaacgtgagatcagaatatacacagatgccggacga
atctgccggccgctgctgatcgtcgagaaacaaaaactgctgctgaagagacgacacatc
gaccaactgaaggaaagggagtacaacaactacagctggcaggacttggtggcgagcggt
gtggttgagtacattgacactctggaggaagagacggtgatgctcgccatgacccctgat
gacctccaggagaagggcgtggcctactgttccacctatactcactgtgagattcacccg
tccatgatcctcggagtttgtgcctccatcattcccttccccgaccacaatcagtctccc
aggaacacgtaccagtctgcgatgggtaaacaggccatgggcgtctacatcaccaacttc
cacgtacgaatggacacactggctcacgtgttgtactaccctcagaaaccactggtcacc
acccgatccatggagtacctgcgcttcagagagcttcctgcaggtatcaactccatcgtg
gcgattgcatcgtatacaggatacaaccaggaggactctgtgatcatgaacaggtcagcc
gtggaccgaggtttcttcaggtctgttttctatcgatcctacaaagagcaggagtcaaag
aaaggtttcgatcaggaggaaatcttcgagaagccgacccgtgaaacctgtcagggtatg
aggcacgccatctacgacaagctggatgacgatgggctgatcgcacccggcgttcgtgtg
tccggtgaggacgtgatcatcggtaagacggtgacgctgccggaaaacgacgacgagctg
gacagcaccaatcggcgttacacaaagagggactgcagcacctttctcagaaccagcgaa
acaggcatcgtggaccaggtgatggtgaccctgaatcaggagggctacaagttctgcaag
atcagggtgcgttctgtccggattcctcagatcggagacaagtttgccagccgacacgga
cagaaaggaacctgtgggatccagtacagacaggaggacatgccattcacctgtgaggga
atcacacctgacattatcatcaatcctcacgccatcccgtccagaatgactgtcggccat
ctgatcgagtgtttgcagggcaaggtgtctgcaaacaagggtgagattggtgacgcgacg
ccatttaacgacgccgtgaacgtacagaaagtgtcgaacctgctctctgaatatggatac
cacctgagaggaaatgaggttctgtataacggcttcaccgggaggaaactcacgtctcag
atcttcatcggtccgacgtattatcagcgtctcaaacacatggtggacgacaagatccac
tcgagggctcggggccccgtccagatcctcaacaggcagccgatggagggaagatcacgt
gatggcggtctgcggttcggggagatggagcgtgattgtcaaatcgctcacggagcggct
cagtttctcaaagagcgtctgttcgaggcgtctgatccgtatcaagtccacgtgtgtaat
ctgtgtggactgatggccatcgccaacacacggacgcacacgtacgagtgtcgaggctgc
cgcaacaagacacagatctctctggtgcggatgccgtacgcttgtaaacttcttttccaa
gagttgatgtcgatgagcatcgcccctcgtatgatgacatcgtag
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integrated database retrieval system
